G53328


Basic Information

Item Value
gene id G53328
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26985978 ~ 26992711 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU63018
TGTTAATTTGCACCTGGTTATGGGAGGTGAAGTCAGCAAAGTCACGTGCACAACTTACTAACCGGTAAATACAGAAGCATCGCTAATTTCATTTCACTATTTTTCCCTCACTGTATTTTCTTAAGTGAATATGTATGAGGGGTGAAGAGCACTTGGCGTGTTGTTCTGTGAGGCTTGTAAGCCAGTTTTGTCCATAACCACGCAATGAGTTTCACGCAAAATGCGGGTTAAAAACAGGCGCGAGCAAACAGTCCATCTGACCCCCAGCGGCCATTTTAACAGCAAGATGAGTTACACATGGAAACATTACACTGGCGACAAGGAGCCTGACCTCAGCTATGCATTCTCCACTGCACAGTTATGCATCGGTTCAGTTTTTCAACACAGACTTGGACCCAAGTTCACCTTGTCCAAGGTAGAACAAGTGGGTGAAAAGACTTGCTATGACAATAAGGCATAAGGAGATTAAGACACAACTAATACAAGTCTGCACGTCATCTAAAGCGCTGAGGACCAGAGATGACTTCAACTGCTCTGCTAAACACAGATGCTTTTTAGAAATCTCTGAACAACATGTAACTGGTGGTGAACAAGGTACAGCCACTATGCACTTAAATGCAGCTAAGAACTACTAACTAACAATCTGCTAACAAGCATATGAACACATGGACaccaaacacacagtgcagacaCTGTAGAGGAAAATACAATCAAGGCAATTGCCCAGCTGAAGGCAGACAGTGTAAAGCTTCTGGAAATCTGAATCACTATGCCAAAGTCTGTCACTCATGCAGGAAGGCGTCTGCACAGCAGATTCCCGACAAGGACTTTTCCCTCAGCACACAGCACAGTATACAAAAGGAAGTTCATTGGGTATCTGTGGCTCGCACAATGTCAGCTCACACAGATTCAGCAGCAATGATGCTTTTGTATTTGTCATCAACGGTGGCGCATTCCCACTGCACAGTTGTTACACCACCTCTAAGGTCCTCATATCAGTGTATGCCAGCCAAACACAGCCATTCTGTGTGAACACTCAACATCGTCTGTCATCTATGACCTCACTGATGGAACGGTTTTCTCCAAGCTCAAACTCACAGCAGGTTGCCACCAACTTAAGTTACACCCAGATAGTCACAGCATTCTCTATTCATCTCAGTTTGAGAcgaaataaacatataaatttgAGCATCAGTTCTGCTGCCAAAGTGCTCCTGAATTTCCCAAATGCAAGGAAGTATACTCCGAGTGAATAGCCTCAGTGATATCATTGTCTGTGGTGTCCAAAGATGCATATGACAAAACTCTCAAAGCTGT

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

RNA

RNA id representative length rna type GC content exon number start site end site
TU63018 True 1317 TUCP 0.44 2 26985978 26992711

Neighbor

gene id symbol gene type direction distance location
gfral gfral coding upstream 52228 26925234 ~ 26933750 (+)
hcrtr2 hcrtr2 coding upstream 62727 26905497 ~ 26923251 (+)
fam83b fam83b coding upstream 98899 26873228 ~ 26887079 (+)
mlip mlip coding upstream 120841 26830224 ~ 26865137 (+)
LOC117596838 NA coding upstream 176470 26803195 ~ 26809508 (+)
bag2 bag2 coding downstream 214617 27207328 ~ 27213122 (+)
si:ch73-52p7.1 LOC108262847 coding downstream 252240 27244951 ~ 27257879 (+)
olig3 olig3 coding downstream 281805 27274516 ~ 27276329 (+)
tnfaip3 tnfaip3,LOC107597710,LOC107720364,LOC107681039,LOC107699163 coding downstream 321822 27314533 ~ 27327655 (+)
psmb1 psmb1,LOC107721174,LOC107699161,LOC107597712,LOC107701973 coding downstream 350210 27342921 ~ 27347922 (+)
G53280 NA non-coding upstream 51713 26933938 ~ 26934265 (+)
G53172 NA non-coding upstream 186460 26798698 ~ 26799518 (+)
G53092 NA non-coding upstream 432826 26552936 ~ 26553152 (+)
G53091 NA non-coding upstream 433256 26552518 ~ 26552722 (+)
G53090 NA non-coding upstream 433693 26552075 ~ 26552285 (+)
G53363 LOC108263596 non-coding downstream 25250 27017961 ~ 27018846 (+)
G53316 NA non-coding downstream 41138 27033849 ~ 27036808 (+)
LOC113542178 NA non-coding downstream 63053 27055764 ~ 27056998 (+)
LOC117596898 NA non-coding downstream 66167 27058878 ~ 27068180 (+)
G53312 dst non-coding downstream 118833 27111544 ~ 27121939 (+)
bcl2l11 bcl2l11 other upstream 1121632 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 1139075 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 1391042 25562402 ~ 25594936 (+)
b3galnt2 b3galnt2 other upstream 2583524 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 2928080 24055154 ~ 24057898 (+)
znf451 znf451 other downstream 205198 27197909 ~ 27207245 (+)
pde10a pde10a other downstream 1208324 28201035 ~ 28301823 (+)
G53692 NA other downstream 1454666 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 1473377 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 2719547 29712258 ~ 29748505 (+)

Expression


Co-expression Network