G53331


Basic Information

Item Value
gene id G53331
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27560172 ~ 27562940 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU63021
TGTAAATTCATACTTTTCCCCAGGCTTAATAAGTACAGCAAGAAAGTAAATAtggaacttttttaaattttgaacacaatatatgtagtgcacttgtaTAAGGAGCAGGAAGGCATTTGGGATTCGACCAATGACACGCCCCTCTTTTCGAATCTACAGCAAACACGTGAAAGGAAACCGCCGGCGGTTTCGGGCTGCGTCCAAAACCCCACATTAAAGTACTAACGCAGATGCTGGCCTGGCGAACGCTCCTGCACACGGCGCCCCCGCACAGCTGGACGAGCTCCGTGAGACTGTGGCAGGGCGGCTGAGACAGCGATGACACAAACATGAGTGGCTGGTCACGGAATAGATCCTGCTGGTGCTCTCCGGCCGAAAGATGCTGCTGTAACCGGCAGATCTGCGAGAAACAGTAGAGAGAAAGGTTGCTATTAGCAATAGTACCTAAATAATAACCCTGTCAAGTTATGCCGTCTG

Function

GO:

id name namespace
GO:0038003 opioid receptor signaling pathway biological_process
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63021 True 477 lncRNA 0.49 2 27560172 27562940

Neighbor

gene id symbol gene type direction distance location
gsta.1 gsta3,LOC108425408,LOC108425446 coding upstream 22501 27532719 ~ 27537671 (+)
gtpbp2a gtpbp2,LOC108263131,LOC107751133 coding upstream 42485 27507235 ~ 27517687 (+)
LOC113542114 bfsp1 coding upstream 124183 27425842 ~ 27435989 (+)
plek plek,LOC107720939,LOC107558215,LOC107727890,LOC107561985 coding upstream 166976 27386257 ~ 27393196 (+)
pno1 pno1,LOC107719218 coding upstream 194701 27360842 ~ 27365471 (+)
csmd1a csmd1,LOC106589815 coding downstream 35174 27598114 ~ 27997810 (+)
rnaset2 rnaset2 coding downstream 538432 28101372 ~ 28107827 (+)
rps6ka2 rps6ka2,LOC107750746,LOC107717821,LOC107702677,LOC105021344 coding downstream 553820 28116760 ~ 28148448 (+)
sft2d1 sft2d1,LOC102776618 coding downstream 590188 28153128 ~ 28170154 (+)
prr18 prr18 coding downstream 608989 28171929 ~ 28173521 (+)
LOC113542161 NA non-coding upstream 29706 27527865 ~ 27530466 (+)
LOC113541894 wdr92 non-coding upstream 204499 27348910 ~ 27355673 (+)
G53402 NA non-coding upstream 219076 27337047 ~ 27341096 (+)
LOC117596902 NA non-coding upstream 286995 27261131 ~ 27273177 (+)
G53340 NA non-coding upstream 316014 27242955 ~ 27244158 (+)
G53614 NA non-coding downstream 501703 28064643 ~ 28067481 (+)
G53616 NA non-coding downstream 537673 28100613 ~ 28100831 (+)
G53665 NA non-coding downstream 704781 28267721 ~ 28267965 (+)
G53666 NA non-coding downstream 705118 28268058 ~ 28268341 (+)
G53676 NA non-coding downstream 714918 28277858 ~ 28278072 (+)
znf451 znf451 other upstream 352927 27197909 ~ 27207245 (+)
G53328 NA other upstream 567461 26985978 ~ 26992711 (+)
bcl2l11 bcl2l11 other upstream 1695826 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 1713269 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 1965236 25562402 ~ 25594936 (+)
pde10a pde10a other downstream 638095 28201035 ~ 28301823 (+)
G53692 NA other downstream 884437 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 903148 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 2149318 29712258 ~ 29748505 (+)
G55091 NA other downstream 2374608 29937548 ~ 29941181 (+)

Expression


Co-expression Network