G53363 (LOC108263596)


Basic Information

Item Value
gene id G53363
gene name LOC108263596
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27017961 ~ 27018846 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU63053
GTTGTTTCTTTTCTGACATATTTCCCAACTTGTGTCTTTCCGTTGATAAAAATGCCAGCAGGGGGTTCCAGGGCCAAGTTTTCAATTTCCAAGTCATCAACGTAAAGCGTTACATCTTCTTCTGTTACCAGAAGACGCAGCTGATgccatttttcatcaaacagtTTCTTTTGCTGGTGATTTGGTGAAGACCACTGTCTGTGTTCCGCTTTGTGTAGTGCTTGTAGTGGTGAATGTGACGGTCCTCTTCAAACCGTTTAAAGTAACTGCCATTTGAGGCTCTCCATCCATAGTCTGTATTCTCCAGAGATCCCAGTCCTCTGTTAGGACTGAACCCTTGTATTTAAGTGTGGCCACAAACACGTAAGAAGGTGGAAGCCCATCAGGAAACAAAG

Function

NR:

description
PREDICTED: collagen alpha-1(XXI) chain-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63053 True 395 lncRNA 0.44 2 27017961 27018846

Neighbor

gene id symbol gene type direction distance location
gfral gfral coding upstream 84211 26925234 ~ 26933750 (+)
hcrtr2 hcrtr2 coding upstream 94710 26905497 ~ 26923251 (+)
fam83b fam83b coding upstream 130882 26873228 ~ 26887079 (+)
mlip mlip coding upstream 152824 26830224 ~ 26865137 (+)
LOC117596838 NA coding upstream 208453 26803195 ~ 26809508 (+)
bag2 bag2 coding downstream 188482 27207328 ~ 27213122 (+)
si:ch73-52p7.1 LOC108262847 coding downstream 226105 27244951 ~ 27257879 (+)
olig3 olig3 coding downstream 255670 27274516 ~ 27276329 (+)
tnfaip3 tnfaip3,LOC107597710,LOC107720364,LOC107681039,LOC107699163 coding downstream 295687 27314533 ~ 27327655 (+)
psmb1 psmb1,LOC107721174,LOC107699161,LOC107597712,LOC107701973 coding downstream 324075 27342921 ~ 27347922 (+)
G53280 NA non-coding upstream 83696 26933938 ~ 26934265 (+)
G53172 NA non-coding upstream 218443 26798698 ~ 26799518 (+)
G53092 NA non-coding upstream 464809 26552936 ~ 26553152 (+)
G53091 NA non-coding upstream 465239 26552518 ~ 26552722 (+)
G53090 NA non-coding upstream 465676 26552075 ~ 26552285 (+)
G53316 NA non-coding downstream 15003 27033849 ~ 27036808 (+)
LOC113542178 NA non-coding downstream 36918 27055764 ~ 27056998 (+)
LOC117596898 NA non-coding downstream 40032 27058878 ~ 27068180 (+)
G53312 dst non-coding downstream 92698 27111544 ~ 27121939 (+)
G53340 NA non-coding downstream 224109 27242955 ~ 27244158 (+)
G53328 NA other upstream 25250 26985978 ~ 26992711 (+)
bcl2l11 bcl2l11 other upstream 1153615 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 1171058 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 1423025 25562402 ~ 25594936 (+)
b3galnt2 b3galnt2 other upstream 2615507 24350184 ~ 24402454 (+)
znf451 znf451 other downstream 179063 27197909 ~ 27207245 (+)
pde10a pde10a other downstream 1182189 28201035 ~ 28301823 (+)
G53692 NA other downstream 1428531 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 1447242 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 2693412 29712258 ~ 29748505 (+)

Expression


Co-expression Network