G53682


Basic Information

Item Value
gene id G53682
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28325642 ~ 28326183 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU63400
TTTGTCCATGTGTGCAGCCTATTAACAATGAATTGCTACTATTCTTCACTCTTCTATATTAGTAACATGGATTAATACAAGTGAAAGCCTGTTGGCACAAAATCCTGTATTTTCTTATGAAAGTTTTACTCAGGTGAGTTCCTGAGTGAGCCAAAACACCTCCTATGACAAATGAAAATTATTAGTGGCTGTCATGTTTCTCCTCACCTTGACCACGGTGCCGCAGGTCTTCAGGCTGAAATGAAGGTTGATGTGAGTGCCATTAGAAACTCCGCGACATGAGGAATTTGACAAAAAGAGCTCCAGGCCACCCACAAGGTCTTTGGGAACAGACACATCAATAGCGCTGGGATCGCAATGCACAGGCACTAGACAGGAAATAAACACACCATTTTAACTTCAATAATCCAATGGAAGTATCTAACCAATTTCCAAGTAAAAGCTGTTAAACCCTGTGTCAACTTGTTTCAGTGCTTCCACAACTCTAATTCTAGACCCACAGTAACCCTAGCATATACACCTCACCCTAGCCCCAACTTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63400 True 542 lncRNA 0.42 1 28325642 28326183

Neighbor

gene id symbol gene type direction distance location
pla2g12b pla2g12b,LOC106526913,LOC103366536 coding upstream 3822 28318767 ~ 28321820 (+)
LOC113542058 NA coding upstream 7949 28315896 ~ 28317693 (+)
tbxtb t,LOC107717823,LOC107660241 coding upstream 130079 28190899 ~ 28195563 (+)
si:ch211-130h14.4 LOC108262915 coding upstream 135117 28174668 ~ 28190525 (+)
prr18 prr18 coding upstream 152121 28171929 ~ 28173521 (+)
micu1 micu1,LOC107754762,LOC107702683,LOC107660220,LOC107717828 coding downstream 70009 28396192 ~ 28435412 (+)
mrps6 mrps6 coding downstream 122943 28449126 ~ 28452109 (+)
psap psap coding downstream 127590 28453773 ~ 28464698 (+)
LOC113542012 LOC108263175,LOC108263176 coding downstream 139476 28465659 ~ 28487384 (+)
mad2l1bp NA coding downstream 182872 28509055 ~ 28516011 (+)
G53678 NA non-coding upstream 34921 28290393 ~ 28290721 (+)
G53676 NA non-coding upstream 47570 28277858 ~ 28278072 (+)
G53666 NA non-coding upstream 57301 28268058 ~ 28268341 (+)
G53665 NA non-coding upstream 57677 28267721 ~ 28267965 (+)
G53616 NA non-coding upstream 224811 28100613 ~ 28100831 (+)
G53688 NA non-coding downstream 48593 28374776 ~ 28378263 (+)
G53629 NA non-coding downstream 110797 28436980 ~ 28437837 (+)
G53693 NA non-coding downstream 122148 28448331 ~ 28448864 (+)
G53699 NA non-coding downstream 141590 28467773 ~ 28467983 (+)
G53702 NA non-coding downstream 157516 28483699 ~ 28483898 (+)
pde10a pde10a other upstream 23819 28201035 ~ 28301823 (+)
znf451 znf451 other upstream 1118397 27197909 ~ 27207245 (+)
G53328 NA other upstream 1332931 26985978 ~ 26992711 (+)
bcl2l11 bcl2l11 other upstream 2461296 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 2478739 25801972 ~ 25846903 (+)
G53692 NA other downstream 121194 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 139905 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 1386075 29712258 ~ 29748505 (+)
G55091 NA other downstream 1611365 29937548 ~ 29941181 (+)
mgst3b LOC108263214,LOC103043280,LOC108426107,LOC106579764 other downstream 2028120 30354303 ~ 30358454 (+)

Expression


Co-expression Network