G53688


Basic Information

Item Value
gene id G53688
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28374776 ~ 28378263 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU63406
CTGCCAGCCAGTTTGGTGAGTCCTAATATCAGCTAATGGCGTATTGGAGCTCTCGTTTAAAAGATTAACAACCACCAGTCGACTGTGGTAGGAACACATGTTGTGTAGTGTGCATCACGTAGCACAATCATGGCATTAGCCTTTGCAATAACTCCACCACCACACTCAGGCAGCCTGGAGTCTAAGACTGCTCTTCTGGAGTAAGTGCTTGTTGGCGAATGTAGGCTACTCAGCTTGAAGGTCTAAAAGCAGAGCTGTTTCTCAGGGCTAGTTGACCCGGTCACATACCCTCTTCGGAGTCCTTACAGACCGTGAGAACACTGCAGCTCGGTACGCAAGGTCGTACTCTTGGCTAAATACAGTGCAGGTTCACCTTCACTTTTCCACAGGTATACTCTGGAGCATGAAGTAAGCACTGGAGCATGATATAGAAAGGAGAGTTAGGAAcgcaacattattattttagaaatacaaGACTAGGCATAAAGGTCAGTCCAGGTGGTTTTGATGGTGGTTTGATGGTTTGATGATAACTTATAAatcttaaaatcttttttttaatccatttaacaaaacacaattaaataaaaaatccaccCGAACGACACGCATTAATCTTTATAACTAACACATGACATTCAAAGGCATCcaagttttttttgtaatgaaattctatGTTGACTCCTTTAGTTTACACGCTCATGGACACGCCGGTCTATTTTCGGTTtcttacattacccacaatgccatttgactacTTCCTGATAGTGAGGCCAATGGGaaagcgatgcagcggcgctttagtcatTTTGTTTGACCAGCATTCTCGCCTCTTCATCTGTacattctgctcaaacagatcagcttccaaagcttcaacgtTCATGCTAACACCAACAAGCTAATATCGTGATTGTCATCTGCTTTGTATTCTGGAACTTCGAGTCCAATGTTTGCTGCCTCCACTACTGCTCCAATTGAATATGGTTGTAACAGTGCTAACAATGTCCTCGTGTGATGTCAGCGTTATTTacaaccgctaacttctcacaggaataaagaAATTACAGCATCGGCCAACAAATGAGCAGTAGAATCACTACAGacatcataaatatttgaatataaacatatttaatgtgtttcagggtggacttttcctttaactgATATGATTGAGCTCCTCATTGTAATTGTGGCATCGACTGTATCAGCTCATACATCCAATAACATCAGTGACAGTCTGACAAGCTGAGGCACAAAGTGTGGGGGAGTGAAaggtctgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgcgtacGATGCTGTATCTCCCTGACAGCTCACAGATGAAGCCAGGCAGCATACTTCCTGTTCCGCTGACATTCTGACAGATCAGTGCGGTGCAAACATGTCTCGAGTAGCCTCCTTCCCCCACAAGACCCAcccagaaaaacaacaaaacgtTGCTTATTAACCCTGCAGCCACCCAGGCGCCGCAAAGCCCCATGTGAGCCGCTGCCACCGCACGTGCCGAGTGAAATCTGATCCTCATAGTAATTATAGAAATGGAGAGCCGTGGTGAGGAATGAGGAAGGAGGCATGTGTTCACAGCTAAAGAGCTAAGCCACAACGCAGAGAACGAAGGAGTCGTCACCAGCTCATTCGAACGGCCAGTAAAGAACTGAACAGGAAAAGATAGACACGGAGCGTCATGcaaaagagaacagaaaaagTTTGGTATAACTTCCAGAATTGTGATCTtgtatttcttccatttctggTGGCATTGCAGGGGGTTTGTACGACTGCCACAGTAATAAGTTTCGCCATTAATTACAAAAGTTTCACTTTACTTTGCCTAATTAATGTGTCACAAACAACTTAACTCGTTTCCTTGCATGGTGCAcccatttaaaaatttaaaaaaaaagtgaacaaaaaatttaaataatagcaAGGTTTAATAGGAATGTGATACTGAATTAAATGCAGGCGTGAGTGCTGATCCTTTTCACCATCTGTGTTGTTTGACTATGTTgtcatactaaaaaaaaaatcaaactgaaCTGTAACCCCACTACTAGCTAACAGCTTCACTGCGCTGGTGTCTACCATAAATCTGGAAATGTCGACTATTTAACATTGAACACTGCTGcgctgagaaaaaaacaaaagaattaccAATTaccaaaacacagacagacagaagtcGTCATTCCAAAGCCTTTGTGCGCCCAACTGACCTGCTCCGGGTCTGTACCGGTAACGCAATCATCTTATTCAGCTAACCGTGTGGAAAATAACTGTGGTGAAAACGGGTGGAGGCTGGAGCGTGGGGTGTTGACGCGGATTTCATCTAGGGTGCACGCCatgattttttatgtttttgcgTGAAGACACACATTTTCAattgttttacttttacacAAATTATCAGTAAGATGAcaaattatgctttttttaattttaggacATGCTTCTTTGACTTTAATTGACCTGACTTGCAAGCAAACTGTAGACAGTGGAAAGgaacacagtgtgtgtctcagtgctcagtgctcgcggaactgaagtgctctcactTGCAACAGTGCTCGACACTCACGAACACCTTTGTTTGAGCACAATTCACAGCATCTTGCACTCATTTTCAGTGATCACACTCGCCGATACTGCTCTGCACGCTCCCATCAGCCACCGTAGCACCTTCTTTCATTAAAAAGATACTGTTTCAACGCTCTAGTCTGAGATTTGTGACCTGAAAACTTACAGCTGTTGTGtcgtttttattatttttttttaatgctttaccTTAAAATTTGTGGTTTAACTTCACTGTTATTGTCACAAAGTACAGAGACAAACAAAATGCAGTATAacctattcatttttaatatgctTGTTTTAGTACCTTAGCATAATTATTGTGTTTTAGTGTCATTTTACTCCTTCCAATTATGTCACCTTAGTTTTAAAGATTGTCTCATCTTGTTTTACTTTGTAGCACTTTGAAATTTGCCTCAACTGTAAAGTGCAGTATAAATAATTtgtattgttataattattttctaCTGAGTTTTGCTAGGATgtgaatgaaataatgaataaatgaacatatggtggtaaacatgtttttactctcactggGGATACCACTTAACCATCACCAGACACAGATCTACTCAAAAGTTatctttttttaagaaagagACTTGTGAGTATTCGTTCAGTTTTAATAAACCATCCGTGGTACAGTCTGTGGCTGCATGTATCAGTTACACCCCTACAGGAGCCTCTAGAACTTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63406 True 3331 lncRNA 0.41 2 28374776 28378263

Neighbor

gene id symbol gene type direction distance location
pla2g12b pla2g12b,LOC106526913,LOC103366536 coding upstream 52956 28318767 ~ 28321820 (+)
LOC113542058 NA coding upstream 57083 28315896 ~ 28317693 (+)
tbxtb t,LOC107717823,LOC107660241 coding upstream 179213 28190899 ~ 28195563 (+)
si:ch211-130h14.4 LOC108262915 coding upstream 184251 28174668 ~ 28190525 (+)
prr18 prr18 coding upstream 201255 28171929 ~ 28173521 (+)
micu1 micu1,LOC107754762,LOC107702683,LOC107660220,LOC107717828 coding downstream 17929 28396192 ~ 28435412 (+)
mrps6 mrps6 coding downstream 70863 28449126 ~ 28452109 (+)
psap psap coding downstream 75510 28453773 ~ 28464698 (+)
LOC113542012 LOC108263175,LOC108263176 coding downstream 87396 28465659 ~ 28487384 (+)
mad2l1bp NA coding downstream 130792 28509055 ~ 28516011 (+)
G53682 NA non-coding upstream 48593 28325642 ~ 28326183 (+)
G53678 NA non-coding upstream 84055 28290393 ~ 28290721 (+)
G53676 NA non-coding upstream 96704 28277858 ~ 28278072 (+)
G53666 NA non-coding upstream 106435 28268058 ~ 28268341 (+)
G53665 NA non-coding upstream 106811 28267721 ~ 28267965 (+)
G53629 NA non-coding downstream 58717 28436980 ~ 28437837 (+)
G53693 NA non-coding downstream 70068 28448331 ~ 28448864 (+)
G53699 NA non-coding downstream 89510 28467773 ~ 28467983 (+)
G53702 NA non-coding downstream 105436 28483699 ~ 28483898 (+)
G54724 NA non-coding downstream 739803 29118066 ~ 29143380 (+)
pde10a pde10a other upstream 72953 28201035 ~ 28301823 (+)
znf451 znf451 other upstream 1167531 27197909 ~ 27207245 (+)
G53328 NA other upstream 1382065 26985978 ~ 26992711 (+)
bcl2l11 bcl2l11 other upstream 2510430 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 2527873 25801972 ~ 25846903 (+)
G53692 NA other downstream 69114 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 87825 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 1333995 29712258 ~ 29748505 (+)
G55091 NA other downstream 1559285 29937548 ~ 29941181 (+)
mgst3b LOC108263214,LOC103043280,LOC108426107,LOC106579764 other downstream 1976040 30354303 ~ 30358454 (+)

Expression


Co-expression Network