G53692


Basic Information

Item Value
gene id G53692
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28447377 ~ 28448311 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU63410
AATGGCTTAAATATCATGAGATGTCTAAGTGGAGTGGAATGGGGGGcaagtttttcttcattaaaaactaTTTATGTAGCACTGATCCGGTCTGTATTTGATTATGGTAGTGTGGTATATGATTcagcatcaaaaaaaaaaataataaatacaagcTCAAGCTATGAGACAGTGTTGTGGAGCAGTAAAGATGACACCCATTCCAGCTTTACAAGTCTTGTTAGGAGACTAGAAATTAGAAGGAAACAATTAATGATCAACTACTGGGCTAACCTCCAGGGGCATAAAGAAGAACATCCTACGAAAATGGTCTTACAGAAGTGCTgggaacaaaacaaaaggtgTAGAATAAGTTTTGGGTGGAGTAGTGGAGTAAAATATATGTAGAAGAAATGCAGGTAAATAGTATCAAGATAAGCCCAACAGTTTTAATTCCCGGAATATGAACCATGGGTTTATGTGACACCTCAGATAGATTTGTATATGTTGGAAgtcaaaaaagcagaaagagaagTAGACCCGTCATCTGCATTTTCAGTATATGTTAGAAACCAATATACCCggtatatacaaatatatacagatgGATCAAAAGATCCAGAGTGTCAGACAACTGGGGCTGCTTTTTTAGTTCCAGGCAGTGGAATCAAGGGAATAAAGTGAACTTCAAATCATTTGGCAGTCTATACTGCAGAAATGGTAGCAATTCTTTTGGCATTGCAGTGGGTAGAGGAACATAAACCCGggaatgttttaatttgttctgACTCAGTATCAGTCTTAAAGAGTTTGAGATCTTTTAAATCTAGCCACCAAGATAATCTCTTTAGTATTTTACAAATACACTGAAGAAttgttcaaaataatatttcagtctGTTTTAAATGGGTTCCTGCACATATAGGAATAAAGGAAAATGAAGAAGTGGataaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63410 True 935 TUCP 0.36 1 28447377 28448311

Neighbor

gene id symbol gene type direction distance location
micu1 micu1,LOC107754762,LOC107702683,LOC107660220,LOC107717828 coding upstream 11965 28396192 ~ 28435412 (+)
pla2g12b pla2g12b,LOC106526913,LOC103366536 coding upstream 125557 28318767 ~ 28321820 (+)
LOC113542058 NA coding upstream 129684 28315896 ~ 28317693 (+)
tbxtb t,LOC107717823,LOC107660241 coding upstream 251814 28190899 ~ 28195563 (+)
si:ch211-130h14.4 LOC108262915 coding upstream 256852 28174668 ~ 28190525 (+)
mrps6 mrps6 coding downstream 815 28449126 ~ 28452109 (+)
psap psap coding downstream 5462 28453773 ~ 28464698 (+)
LOC113542012 LOC108263175,LOC108263176 coding downstream 17348 28465659 ~ 28487384 (+)
mad2l1bp NA coding downstream 60744 28509055 ~ 28516011 (+)
macrod2 macrod2 coding downstream 74035 28522346 ~ 29072960 (+)
G53629 NA non-coding upstream 9540 28436980 ~ 28437837 (+)
G53688 NA non-coding upstream 69114 28374776 ~ 28378263 (+)
G53682 NA non-coding upstream 121194 28325642 ~ 28326183 (+)
G53678 NA non-coding upstream 156656 28290393 ~ 28290721 (+)
G53676 NA non-coding upstream 169305 28277858 ~ 28278072 (+)
G53693 NA non-coding downstream 20 28448331 ~ 28448864 (+)
G53699 NA non-coding downstream 19462 28467773 ~ 28467983 (+)
G53702 NA non-coding downstream 35388 28483699 ~ 28483898 (+)
G54724 NA non-coding downstream 669755 29118066 ~ 29143380 (+)
G54725 NA non-coding downstream 676182 29124493 ~ 29184455 (+)
pde10a pde10a other upstream 145554 28201035 ~ 28301823 (+)
znf451 znf451 other upstream 1240132 27197909 ~ 27207245 (+)
G53328 NA other upstream 1454666 26985978 ~ 26992711 (+)
bcl2l11 bcl2l11 other upstream 2583031 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 2600474 25801972 ~ 25846903 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 17777 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 1263947 29712258 ~ 29748505 (+)
G55091 NA other downstream 1489237 29937548 ~ 29941181 (+)
mgst3b LOC108263214,LOC103043280,LOC108426107,LOC106579764 other downstream 1905992 30354303 ~ 30358454 (+)
LOC113542119 NA other downstream 2031615 30479926 ~ 30486287 (+)

Expression


Co-expression Network