G53693


Basic Information

Item Value
gene id G53693
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28448331 ~ 28448864 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU63411
AGAGAAATCATAGAGATTCAAGTTCCGTTAAGTAAGTCAGAGATTAAGGTTTTAATTTGGAGtAAAGTGATTGAAGAATGGCAAGTAAAGTGGAATAATGGGAAAAAGGGAAGATTTTTTTACagcttaattaataaaataagtcAGAAGATAAAATGTATAGGTAAATCAAGGAAAGAAGAGGTTATTTATAATAGAATAATGTTAGGTCATTCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63411 True 218 lncRNA 0.28 2 28448331 28448864

Neighbor

gene id symbol gene type direction distance location
micu1 micu1,LOC107754762,LOC107702683,LOC107660220,LOC107717828 coding upstream 12919 28396192 ~ 28435412 (+)
pla2g12b pla2g12b,LOC106526913,LOC103366536 coding upstream 126511 28318767 ~ 28321820 (+)
LOC113542058 NA coding upstream 130638 28315896 ~ 28317693 (+)
tbxtb t,LOC107717823,LOC107660241 coding upstream 252768 28190899 ~ 28195563 (+)
si:ch211-130h14.4 LOC108262915 coding upstream 257806 28174668 ~ 28190525 (+)
mrps6 mrps6 coding downstream 262 28449126 ~ 28452109 (+)
psap psap coding downstream 4909 28453773 ~ 28464698 (+)
LOC113542012 LOC108263175,LOC108263176 coding downstream 16795 28465659 ~ 28487384 (+)
mad2l1bp NA coding downstream 60191 28509055 ~ 28516011 (+)
macrod2 macrod2 coding downstream 73482 28522346 ~ 29072960 (+)
G53629 NA non-coding upstream 10494 28436980 ~ 28437837 (+)
G53688 NA non-coding upstream 70068 28374776 ~ 28378263 (+)
G53682 NA non-coding upstream 122148 28325642 ~ 28326183 (+)
G53678 NA non-coding upstream 157610 28290393 ~ 28290721 (+)
G53676 NA non-coding upstream 170259 28277858 ~ 28278072 (+)
G53699 NA non-coding downstream 18909 28467773 ~ 28467983 (+)
G53702 NA non-coding downstream 34835 28483699 ~ 28483898 (+)
G54724 NA non-coding downstream 669202 29118066 ~ 29143380 (+)
G54725 NA non-coding downstream 675629 29124493 ~ 29184455 (+)
LOC113542173 NA non-coding downstream 1003032 29451896 ~ 29474301 (+)
G53692 NA other upstream 20 28447377 ~ 28448311 (+)
pde10a pde10a other upstream 146508 28201035 ~ 28301823 (+)
znf451 znf451 other upstream 1241086 27197909 ~ 27207245 (+)
G53328 NA other upstream 1455620 26985978 ~ 26992711 (+)
bcl2l11 bcl2l11 other upstream 2583985 25850600 ~ 25864346 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 17224 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 1263394 29712258 ~ 29748505 (+)
G55091 NA other downstream 1488684 29937548 ~ 29941181 (+)
mgst3b LOC108263214,LOC103043280,LOC108426107,LOC106579764 other downstream 1905439 30354303 ~ 30358454 (+)
LOC113542119 NA other downstream 2031062 30479926 ~ 30486287 (+)

Expression


Co-expression Network