G53851 (tnfaip3,LOC107597710)


Basic Information

Item Value
gene id G53851
gene name tnfaip3,LOC107597710
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27318088 ~ 27319622 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU63597
AAGGTGTTACCATTTGTCCGGAGTGGCACCAGCTTCTTGACCTCACGGCACCAGTTGAGCCTCTTCTCCTGCTCCAGTGAGGTCTGCATAGCCCGGTCCAAGATGGCCGACTGGATGATCTCACGGAAGGCCTGTGGGAACTGGCTCATCCGGATCATTTCCAGTGTGTAGCGGTGCATGCCACGAAGATGGTGAAGCAGACCGCTACTGGCTGACGGCTTTACGACATCATGGGGCACGCGCTCTCGGATCTTCATGGCCTTCAGGAGGTTACTCACAAACAGGAACTTGGGCAGGAAGTTTTGGCCCTGTGACATTGTGTTCTCTTGGGAAAGGAGCGGAAAACCAGTTTAGATGCTCCGGTCCTCCGccgcctgctgctgctgctgctgctggaatCAGTGTAACCCCGAGAAGCCTAGCAGTCCATGGCGCCTTCAAACCCAACCAACGCAGCCTCGTTCACCAAGCGCACATTCTACGCGttcaaaaaaacacagtgtagGACTTAAGCTAGTCGAAAACGACATCGAATTGATGTCAATAAGGAAATACCAAAGGGGATTTCCGAGGAGGTACTTTC

Function

symbol description
tnfaip3 Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity and thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be active in cytoplasm and nucleus. Is expressed in intestine. Human ortholog(s) of this gene implicated in familial Behcet-like autoinflammatory syndrome. Orthologous to human TNFAIP3 (TNF alpha induced protein 3).

NR:

description
PREDICTED: tumor necrosis factor alpha-induced protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63597 True 583 lncRNA 0.54 2 27318088 27319622

Neighbor

gene id symbol gene type direction distance location
ifngr1l NA coding downstream 71724 27229014 ~ 27246364 (-)
rab23 rab23 coding downstream 94870 27213100 ~ 27223218 (-)
zmp:0000000760 LOC108262759 coding downstream 262410 27033924 ~ 27055678 (-)
col21a1 col21a1,LOC108263596,LOC107681042,LOC107565055 coding downstream 292198 26975725 ~ 27025890 (-)
bmp5 bmp5,LOC107712332 coding downstream 348881 26959104 ~ 26969207 (-)
perp perp coding upstream 17426 27337048 ~ 27341117 (-)
wdr92 wdr92 coding upstream 35380 27355002 ~ 27360666 (-)
ppp3r1a PPP3R1,ppp3r1,LOC108441257,LOC107727894,LOC106024317,LOC107699153 coding upstream 46696 27366318 ~ 27380631 (-)
cnrip1b NA coding upstream 62682 27382304 ~ 27385511 (-)
prokr1b prokr1,prokr1b,LOC108263766,LOC108425411,LOC107721082,LOC107699131,LOC107727892,LOC107680161 coding upstream 92408 27412030 ~ 27421154 (-)
LOC117596885 NA non-coding downstream 3737 27305874 ~ 27314351 (-)
G53732 NA non-coding downstream 64136 27226345 ~ 27253952 (-)
LOC117596899 NA non-coding downstream 116190 27197359 ~ 27201898 (-)
G53809 NA non-coding downstream 291050 27026815 ~ 27027038 (-)
G53761 NA non-coding downstream 450211 26867658 ~ 26867877 (-)
G53862 NA non-coding upstream 47739 27367361 ~ 27368060 (-)
G53729 NA non-coding upstream 210954 27530576 ~ 27803450 (-)
LOC113542054 NA non-coding upstream 658822 27978444 ~ 28028256 (-)
G54201 NA non-coding upstream 780751 28100373 ~ 28100589 (-)
G54204 NA non-coding upstream 787093 28106715 ~ 28175966 (-)
dst dst other downstream 122133 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 1407969 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 2582200 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 2666241 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 3185605 24108351 ~ 24132483 (-)
zgc:163080 tmem14a other upstream 218147 27537769 ~ 27541331 (-)
G54269 NA other upstream 1113598 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 2559673 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 2792209 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 2833286 30152908 ~ 30161224 (-)

Expression


Co-expression Network