G53862


Basic Information

Item Value
gene id G53862
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27367361 ~ 27368060 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU63617
gaaaataatagatgaTTGATAATAGATAGGAAATGGCTATGAATGGAATAACTCTCTTTTATAACTAGTAAATATCACCAAGAACagagtttaaaaatgaacaaagaagTGCGCAGGTGggcaaacaatggtgatcagtgattgagcATCGGGAAAAGTGGggatcaaaaaaaaagtctagcaACAAAGTTGGCAACACTTATGCAGACTGTTGGggaaataacatttaaaaactttatgCATCTATGCTTAGACATTACAAGATTATAACAGGCGAAGAAAAGCATAAATCAGTCTCCTTTAGAGTCgagtgtatgtgtacatgtcTGTCCAGGTGTTTCTCTCTTCATTCACTGTTACCTGCTTAAGAGTGATGACTTCTGTTGTTTGACTTATATGTAGTATTGAATCATTCTTCGTCATAACTATTGTTTGTAGTGAAAATGCGTTTTAGCACAAGCTGTGGCTTTCTGTGCTGCAGTCTCTGTTTTTCAGAAGAATATTTTGTAGTTGTTTCTGGTTAGATGGAAACTCAGTGTTGTAGCATTTGTATCATTATGAGTTACTTTAGGTACTTCAGGTTTGTATTTGATTCTTCTTTACCGAATTGTGTCGGATAAAAGTGTATAccg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63617 True 632 lncRNA 0.35 2 27367361 27368060

Neighbor

gene id symbol gene type direction distance location
wdr92 wdr92 coding downstream 6695 27355002 ~ 27360666 (-)
perp perp coding downstream 26244 27337048 ~ 27341117 (-)
ifngr1l NA coding downstream 120997 27229014 ~ 27246364 (-)
rab23 rab23 coding downstream 144143 27213100 ~ 27223218 (-)
zmp:0000000760 LOC108262759 coding downstream 311683 27033924 ~ 27055678 (-)
cnrip1b NA coding upstream 14244 27382304 ~ 27385511 (-)
prokr1b prokr1,prokr1b,LOC108263766,LOC108425411,LOC107721082,LOC107699131,LOC107727892,LOC107680161 coding upstream 43970 27412030 ~ 27421154 (-)
pcsk2 pcsk2,LOC107701967,LOC107699156 coding upstream 69085 27437145 ~ 27473721 (-)
LOC113542117 otor coding upstream 133602 27501662 ~ 27504308 (-)
polh polh coding upstream 150809 27518869 ~ 27525942 (-)
G53851 tnfaip3,LOC107597710 non-coding downstream 47739 27318088 ~ 27319622 (-)
LOC117596885 NA non-coding downstream 53010 27305874 ~ 27314351 (-)
G53732 NA non-coding downstream 113409 27226345 ~ 27253952 (-)
LOC117596899 NA non-coding downstream 165463 27197359 ~ 27201898 (-)
G53809 NA non-coding downstream 340323 27026815 ~ 27027038 (-)
G53729 NA non-coding upstream 162516 27530576 ~ 27803450 (-)
LOC113542054 NA non-coding upstream 610384 27978444 ~ 28028256 (-)
G54201 NA non-coding upstream 732313 28100373 ~ 28100589 (-)
G54204 NA non-coding upstream 738655 28106715 ~ 28175966 (-)
G54219 NA non-coding upstream 778278 28146338 ~ 28146866 (-)
dst dst other downstream 171406 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 1457242 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 2631473 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 2715514 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 3234878 24108351 ~ 24132483 (-)
zgc:163080 tmem14a other upstream 169709 27537769 ~ 27541331 (-)
G54269 NA other upstream 1065160 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 2511235 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 2743771 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 2784848 30152908 ~ 30161224 (-)

Expression


Co-expression Network