G54204


Basic Information

Item Value
gene id G54204
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28106715 ~ 28175966 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU63970
acacacacacacacacacacacacacacacacacacagacacacacacacccCCCACCAGAGTACCACAGCCAAATGAGGTAACTGAGTACATTGTGAAAACATAATGATTACATAACATCATAAACACTTTTCAGCCTGCTTGAGTTATTGACAGAGCAAGTGGTGACCTCCAGTGGTCTACATGTGAACGCACAGAATTACTAGCCTATACCTGGAGGTCCACTGGTCACACATATGTTGCAAGGTGTTGTCCAAACTAGCACTGTAATTTGGACGTCAAGAAAACCCTGCTCCCTCAAGAGCTTCATATTCAACAGGCACAAACAGGACAAGCGTGAATTACAGTGTCATCATATCCGATTGCACCACATCAAGTTTTGCAGACCTCAACGCTTTAAAGAAAGCGTGGCGTCTGCAGTGGAGGGTAGTAGACTGGCACAgaggcatcacacacactgaatccTGGGTGGTCATTGGAGACATACGGTAGAATTTCGTTGTCTCGACTCTGAAGCTCACCCATGCTGTTTTCACAGTCGAGAAGCTGAAACTGCCTGTCAAAACAGATCTCTATCTGGCCCAAGGTCTGGAACTCACtttc
>TU63973
AagctcttctttttattttttttttcggtcCACTATACTGGTTTGAAATGTgtgcataaatatgcaaataaaaatctCCAATTTCAATCAGTTATTTTCAGTATAGAGAAAACACAAGAAACAACTCTGGAACAAGAGAGATAACATCATAATCATAACCAGCAATAAGGCTTATTGTGTATAATAAGCCAGactatattacagtacagtgggTTAAGGGTTTACATTAGCATTCTGAGCTTAATGACTGCCTATGAAGCTCAACTGCTTGGCATCCTCTTAAATGTACTGTAAAAGACTAAGTATGAACTGTGTACAAAATGAACAACTTCATGTGCTTTTAATGAACTGGTTTTAAAAGGATTCGATTCTCGTAACATGGGTAATAATTATAAATCTAAATTAATTCATACTGGTTAGATATTCATTCCTTAATTTGggaaaaaagtttatatttCACTTACCCCCCCCcagaacagacacacacacacacacacacacacagacgcacacacacacacacagacgcacacccCCCACCAGAGTACCACAGCCAAATGAGGTAACTGAGTACATTGTGAAAACATAATGATTACATAACATCATAAACACTTTTCAGCCTGCTTGAGTTATTGACAGAGCAAGTGGTGACCTCCAGTGGTCTACATGTGAACGCACAGAATTACTAGCCTATACCTGGAGGTCCACTGGTCACACATATGTTGCAAGGTGTTGTCCAAACTAGCACTGTAATTTGGACGTCAAGAAAACCCTGCTCCCTCAAGAGCTTCATATTCAACAGGCACAAACAGGACAAGCGTGAATTACAGTGTCATCATATCCGATTGCACCACATCAAGTTTTGCAGACCTCAACGCTTTAAAGAAAGCGTGGCGTCTGCAGTGGAGGGTAGTAGACTGGCACAgaggcatcacacacactgaatccTGGGTGGTCATTGGAGACATACGGTAGAATTTCGTTGTCTCGACTCTGAAGCTCACCCATGCTGTTTTCACAGTCGAGAAGCTGAAACTGCCTGTCAAAACAGATCTCTATCTGGCCCAAGGTCTGGAACTCACtttc
>TU63977
AagctcttctttttattttttttttcggtcCACTATACTGGTTTGAAATGTgtgcataaatatgcaaataaaaatctCCAATTTCAATCAGTTATTTTCAGTATAGAGAAAACACAAGAAACAACTCTGGAACAAGAGAGATAACATCATAATCATAACCAGCAATAAGGCTTATTGTGTATAATAAGCCAGactatattacagtacagtgggTTAAGGGTTTACATTAGCATTCTGAGCTTAATGACTGCCTATGAAGCTCAACTGCTTGGCATCCTCTTAAATGTACTGTAAAAGACTAAGTATGAACTGTGTACAAAATGAACAACTTCATGTGCTTTTAATGAACTGGTTTTAAAAGGATTCGATTCTCGTAACATGGGTAATAATTATAAATCTAAATTAATTCATACTGGTTAGATATTCATTCCTTAATTTGggaaaaaagtttatatttCACTTACCCCCCCCcagaacagacacacacacacgcacacacagacgcacacacacacacacagacgcacacccCCCACCAGAGTACCACAGCCAAATGAGGTAACTGAGTACATTGTGAAAACATAATGATTACATAACATCATAAACACTTTTCAGCCTGCTTGAGTTATTGACAGAGCAAGTGGTGACCTCCAGTGGTCTACATGTGAACGCACAGAATTACTAGCCTATACCTGGAGGTCCACTGGTCACACATATGTTGCAAGGTGTTGTCCAAACTAGCACTGTAATTTGGACGTCAAGAAAACCCTGCTCCCTCAAGAGCTTCATATTCAACAGGCACAAACAGGACAAGCGTGAATTACAGTGTCATCATATCCGATTGCACCACATCAAGTTTTGCAGACCTCAACGCTTTAAAGAAAGCGTGGCGTCTGCAGTGGAGGGTAGTAGACTGGCACAgaggcatcacacacactgaatccTGGGTGGTCATTGGAGACATACGGTAGAATTTCGTTGTCTCGACTCTGAAGCTCACCCATGCTGTTTTCACAGTCGAGAAGCTGAAACTGCCTGTCAAAACAGATCTCTATCTGGCCCAAGGTCTGGAACTCACtttc

Function

NR:

description
PREDICTED: kinesin-1 heavy chain isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63970 False 603 lncRNA 0.46 2 28106715 28175966
TU63973 True 1086 lncRNA 0.40 2 28106715 28107820
TU63977 False 1082 lncRNA 0.40 2 28106715 28107820

Neighbor

gene id symbol gene type direction distance location
myom2b myom2 coding downstream 7259 28067773 ~ 28099456 (-)
mcph1 mcph1,LOC107568906 coding downstream 508668 27562257 ~ 27598047 (-)
agpat5 agpat5,LOC107665182,LOC107717842 coding downstream 546695 27548265 ~ 27560020 (-)
polh polh coding downstream 580773 27518869 ~ 27525942 (-)
LOC113542117 otor coding downstream 602407 27501662 ~ 27504308 (-)
oit3 oit3,LOC107564524,LOC107754765,LOC107660216,LOC107717846 coding upstream 138747 28314713 ~ 28330532 (-)
mcu mcu,LOC107660217,LOC107564525,LOC107702682,LOC107754763 coding upstream 157659 28333625 ~ 28388691 (-)
nolc1 nolc1,LOC107717830 coding upstream 261039 28437005 ~ 28446340 (-)
LOC113542013 NA coding upstream 292990 28468956 ~ 28485759 (-)
LOC113542015 NA coding upstream 318676 28494642 ~ 28496602 (-)
G54201 NA non-coding downstream 6126 28100373 ~ 28100589 (-)
LOC113542054 NA non-coding downstream 78459 27978444 ~ 28028256 (-)
G53729 NA non-coding downstream 303265 27530576 ~ 27803450 (-)
G53862 NA non-coding downstream 738655 27367361 ~ 27368060 (-)
G53851 tnfaip3,LOC107597710 non-coding downstream 787093 27318088 ~ 27319622 (-)
G54229 NA non-coding upstream 61249 28237215 ~ 28237665 (-)
G54276 NA non-coding upstream 71704 28247670 ~ 28248633 (-)
G54287 NA non-coding upstream 91193 28267159 ~ 28267573 (-)
G54293 NA non-coding upstream 99877 28275843 ~ 28276054 (-)
G54295 NA non-coding upstream 102526 28278492 ~ 28281500 (-)
zgc:163080 tmem14a other downstream 565384 27537769 ~ 27541331 (-)
dst dst other downstream 910760 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 2196596 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 3370827 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 3454868 24451986 ~ 24651847 (-)
G54269 NA other upstream 257254 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 1703329 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 1935865 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 1976942 30152908 ~ 30161224 (-)
runx3 runx3 other upstream 2022359 30198325 ~ 30253456 (-)

Expression


Co-expression Network