G54269


Basic Information

Item Value
gene id G54269
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28433220 ~ 28435411 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU64047
TGTGAAAATGGTTTAATATAATAACTGTGCACATCAGTCATACTCATTCAATAATAGACATTCAAGTACATAACTTCTCAATGTAGTTTTTCTTACACCCATAGttgctttataattatataaaaaaaaaaagaataagaagagGGTATTTCAGAGGTAAAGTACACTATAATGCTGAGTGCTGGGGTTTGGCTTTTCCGTATGCATCCtttaaaacagactttaaaaGTACATGTTTTGATATGTAAGAAGCCAGAGAGCTGTTTCAGTGCATGTCGACAACACGTGCAAAACATCCCACAATCCCCTCAGCCCTTAGAGTAGAACTCCAGCATTTTCACTTAATCTATATCCAACACATCTGAAGCATATGCCAAAGGAAAAGAACAGACATGTTTTCCTGTACTAAGAAAAGAACTGAAACCTGTTTACACGAAAGTCCAACCTTGATCCAGTAGTTACTGAATCAATAAGCGTTTAAAATATGCAACTATACTGTATAACCCAAGTTCAATACTACTACGCGCTGCAGCAGTGAAGGATGAGAGTGTTCTTACATAGatttttttttaaatagatgggggtttttgctcttttctcaGTATTGGTAAACGTGTTGAAATTCTTGCCTGTGATATTTGCACATATGCTGCAGATGGGGCAGACTCTATGAGACATGTCAGCTGAGAAGGGGCTAATGTGTAGAGGCTGGAGACACTCTTTttcacacatgcgcgcacacacacacacacacacacacacacacactgcagcagttACCTCATGCAGCAGCCCTGGCCAATACAGCATGTGCACGATTTATTACATGCCATCTTAAGTTCAATTCTTAATTTAGTTGGCTGCAGACTAAGCTCcactgtcttcctctctctctctctctctctctctctctcgctcttttcACCTCTCTcacctcccctctctctctatacccTGCTACTGCTGTTTAGGCATGGCGAAGTCCCACGCCGTGTCCTGCGCGCACTTCCACATAGCACGCACCAGGCGGGTGAAGCCCATGTCCTTGGGCTTCTCAAGCCCCCGCATCAGCCTCTGCTTCATGATGGATATGAACTCCTTGTTGCTCAGCTCGCCGTTACCTGAGACAGAGATGCTGTCAATTACTGCACTTTAGTTTCATTCTATATTCCATTTCTGGAGAGAAGCAAGCACACACTTACCGTCGCAATCGAATAAGGCGAACACCACGTCGCACACGTGGTCTGACAGCTCCACCTTGGCTACAGTGCGAGCCACTTGCTTCATGGTGGCTAGAGAGAGGGCAAGAGGAACAATAATATTAGCACACAGGAGTCCGCCATGTTTGCCTGCAGTCACAAATTTATACTAGCAATGTCTCATGAAGCAAAGATCTGGCAAAGCAGATTGTAGTGAGATACTGAGTTTGTGTCTTTAACGATTCTCTAGCTCAATCAATAGAAGATACTTTCTCCCGGGTGAGGAGTTTCATCAGGCTAAGATGGAAGGAGTAAGGGAGAaaatgggtgaaaaaaaaaaggtgtgaaaaTAGGTAGTAGGGTCATCAAGAATCAGAAAACAGGAACTGTGGACATCAGAGAGGGACAGAATAACAATCAACTGCCACAAAGCAGCCTCTGGGTCGCAgctgagcaaaaataaagaaaaaaaaaataacaaagaccATGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64047 True 1690 TUCP 0.43 2 28433220 28435411

Neighbor

gene id symbol gene type direction distance location
mcu mcu,LOC107660217,LOC107564525,LOC107702682,LOC107754763 coding downstream 44529 28333625 ~ 28388691 (-)
oit3 oit3,LOC107564524,LOC107754765,LOC107660216,LOC107717846 coding downstream 102688 28314713 ~ 28330532 (-)
myom2b myom2 coding downstream 333764 28067773 ~ 28099456 (-)
mcph1 mcph1,LOC107568906 coding downstream 835173 27562257 ~ 27598047 (-)
agpat5 agpat5,LOC107665182,LOC107717842 coding downstream 873200 27548265 ~ 27560020 (-)
nolc1 nolc1,LOC107717830 coding upstream 1594 28437005 ~ 28446340 (-)
LOC113542013 NA coding upstream 33545 28468956 ~ 28485759 (-)
LOC113542015 NA coding upstream 59231 28494642 ~ 28496602 (-)
LOC113541930 NA coding upstream 64195 28499606 ~ 28501398 (-)
LOC113542138 NA coding upstream 68689 28504100 ~ 28505277 (-)
G54273 NA non-coding downstream 3880 28427453 ~ 28429340 (-)
G54306 NA non-coding downstream 66504 28366303 ~ 28366716 (-)
G54305 NA non-coding downstream 70977 28356426 ~ 28362243 (-)
G54265 pla2g12b,LOC107564523,LOC107660215 non-coding downstream 111406 28320533 ~ 28321814 (-)
G54303 NA non-coding downstream 117730 28315276 ~ 28315490 (-)
G54320 NA non-coding upstream 35480 28470891 ~ 28471098 (-)
G54324 NA non-coding upstream 49571 28484982 ~ 28485245 (-)
G54327 NA non-coding upstream 61360 28496771 ~ 28497888 (-)
LOC117596864 NA non-coding upstream 567869 29003280 ~ 29008803 (-)
LOC117596831 NA non-coding upstream 641899 29077310 ~ 29081966 (-)
zgc:163080 tmem14a other downstream 891889 27537769 ~ 27541331 (-)
dst dst other downstream 1237265 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 2523101 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 3697332 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 3781373 24451986 ~ 24651847 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 1443884 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 1676420 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 1717497 30152908 ~ 30161224 (-)
runx3 runx3 other upstream 1762914 30198325 ~ 30253456 (-)
rsrp1 rsrp1 other upstream 1904988 30340399 ~ 30344538 (-)

Expression


Co-expression Network