G54271 (pde10a,LOC107754764)


Basic Information

Item Value
gene id G54271
gene name pde10a,LOC107754764
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28295936 ~ 28297769 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU64049
tctgacctgtgGGCGTGGTTGTTCAGGTCCAGCGCGCCTGTGCTCAGCAGATCAGAAAGCTGCTTGCGGTTGCCAAAGTAGAGTGCCAGGTCGGTGGCAATGATGGCTTTGCGGATGATCTCTAGCACCTGCTCGTACTCGCTGGAAGTCAGGTTGGAGAAAATATTGTGCCCTTCCTGCAGGATAGACACTGTCTGGGAGAAATGATGCTGTTCCATGGTGGAGGTGGAATACAGCGCCGCCAGCGGGTGGTCAAACTTCTGCAGGTAGCTGTTGCTGTAGCCTCGGTGGTCCAAGTCATGACACAAGCAGGCTATAAGCAGACCTTTCC

Function

symbol description
pde10a Predicted to enable cGMP-stimulated cyclic-nucleotide phosphodiesterase activity. Predicted to be involved in negative regulation of cGMP-mediated signaling and signal transduction. Is expressed in chordo neural hinge; epidermis; nervous system; and notochord. Orthologous to human PDE10A (phosphodiesterase 10A).

NR:

description
PREDICTED: cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64049 True 331 lncRNA 0.55 2 28295936 28297769

Neighbor

gene id symbol gene type direction distance location
myom2b myom2 coding downstream 196480 28067773 ~ 28099456 (-)
mcph1 mcph1,LOC107568906 coding downstream 697889 27562257 ~ 27598047 (-)
agpat5 agpat5,LOC107665182,LOC107717842 coding downstream 735916 27548265 ~ 27560020 (-)
polh polh coding downstream 769994 27518869 ~ 27525942 (-)
LOC113542117 otor coding downstream 791628 27501662 ~ 27504308 (-)
oit3 oit3,LOC107564524,LOC107754765,LOC107660216,LOC107717846 coding upstream 16944 28314713 ~ 28330532 (-)
mcu mcu,LOC107660217,LOC107564525,LOC107702682,LOC107754763 coding upstream 35856 28333625 ~ 28388691 (-)
nolc1 nolc1,LOC107717830 coding upstream 139236 28437005 ~ 28446340 (-)
LOC113542013 NA coding upstream 171187 28468956 ~ 28485759 (-)
LOC113542015 NA coding upstream 196873 28494642 ~ 28496602 (-)
G54298 NA non-coding downstream 5457 28290038 ~ 28290479 (-)
G54295 NA non-coding downstream 14436 28278492 ~ 28281500 (-)
G54293 NA non-coding downstream 19882 28275843 ~ 28276054 (-)
G54287 NA non-coding downstream 28363 28267159 ~ 28267573 (-)
G54276 NA non-coding downstream 47303 28247670 ~ 28248633 (-)
G54270 NA non-coding upstream 1151 28298920 ~ 28301519 (-)
G54301 NA non-coding upstream 15177 28312946 ~ 28314129 (-)
G54303 NA non-coding upstream 17507 28315276 ~ 28315490 (-)
G54265 pla2g12b,LOC107564523,LOC107660215 non-coding upstream 22764 28320533 ~ 28321814 (-)
G54305 NA non-coding upstream 58657 28356426 ~ 28362243 (-)
zgc:163080 tmem14a other downstream 754605 27537769 ~ 27541331 (-)
dst dst other downstream 1099981 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 2385817 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 3560048 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 3644089 24451986 ~ 24651847 (-)
G54269 NA other upstream 135451 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 1581526 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 1814062 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 1855139 30152908 ~ 30161224 (-)
runx3 runx3 other upstream 1900556 30198325 ~ 30253456 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G36536 NA non-coding CI01000005 null 1613131 ~ 1616304 (-)