G54295


Basic Information

Item Value
gene id G54295
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28278492 ~ 28281500 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU64073
TCGACTTGAGTGTATATTTGGGGtctttttccttattttctccccaatttggtcatctgccaattcCTACCTGCCAGCCAGCTTTCCCATATCATATGAGAGTTACCAATAACAGAGGGTGAAAGCTAAAGTGCTTCCTCTGAGagatgtgaagccagccaactgcatctttgtGAACTTCTTTAGGatgctgcatcacaggacagtgtaacacactcagaggaaagcgctgtctaccctcttctacatacatgagctcacagacacccagaGAGGACAGTGCTTAGCACAAGAGCCCCTAAATAACCAGGCACAAAACAGCTCCAACACATCAATAATCCACACCTATATTTTACAGTGGCTATCAGATACTTCTACTCATATGATGTCAagtttttcaccaaacatttGATTGGATTTGAGGTTGATCATATCGGAACACAGAGCATTATTACATGGCGTGGTGCCATGTAACAGTTGATTTTACCACATGAAACCAACTGGACATATCTGAAACCATGGTCTGCATTTTTCTGCTCCTGGCACCATTCTCAGACTttcaaaattttgttttttattatggccctgattgtgcttaatggtatttttaacgTGGCTTGTGCAAGCCAACAAACATCTGTCTCTGTGTTGAAAGCTCTTTGTGATGGATGACAACGAGACATATTAATATCCCGGAAATAACAGGATGTGGCCAAAGATAAAAACAGAGTGagagcaattttttaaaatagtaaattatTGTTTTAGGtgaaaattttaatcattgcaTAATGGGCCCATGCTTCAGTATGTGTTGAGACATATGCAAAACAACTATCCATACCAAGCTGGATTTCCATTATCATCAAACATGGTGTAATCTTAGTGATGGAGCTTAAtcagtgtagttgtgtgtgtgtgtgtatgaggccTGACCTGTTTTGATGATGTTGCACAATTCGTACAGCAGGAGTTTGTTGTCTCCGCCTGTGTCCAGCCGCTGCTCCATGTAGCTGTTGAGCTCGTAAACCACGCCCTGCATATTAGTGTCCTGGTACTGCTGGACACAACAGACATACACAGCATGCAACTAGCCAAACACAAACGTCATGTACTGCATTAAAATTCTGTCTGACATAACAcaaatacatataaacacacaaatacatgctAGAACTCTCTACGAATCCCTGTCTGTGAAACCCATCTGCCCTGGATACACTCAGAAATCCCACAACCACTTACAAAGTAGGTCTGTGTGTTATGCAACAGCAGCAAAAAACCAGCATGTTTTGTCTGTGTTGCCTCAAACAAGGGCACGTGAATGATAATGGCAGACGTCCTGTGTTGAAAAAGTCATTACAAAAATTTACGATGTAATGACAAAGCTGAATAATTATGAACCTTCTAATAGGAGGATAAAAACatgaaactatttttttttaaacaggtttGTGACAAAACTCCTTGTGTGTCACCTAAaactgtttttacatttaaatttatgtcAAGACAGTTgacaatcagccataacattaaaaccactgacaggcgaagtaaataacattggtgaagtgaataacatctCGTCacaatggcacctgtaaaggggtgagatgtattaggcagcaagtgaacagtcaggaAGTAGGAAAAGTGGGAAAGCATAAGATTCTGagggccagattgtgatggctacACGACTGGgttagagcatctccaaaatggcaggtcttgtgggttgTACCTAGCAAAAGTGGTCCAatgaaggacaaccagtgaaccagcgacagggtcatgggcgcccaaggctcactgatacGCATGGGGAGTGAATGCTAGCGCATCTGgttcgatcccacagaagagctactgtagcacaaattgctgaaaaagttaatgctggctatgatagaaaggtgtcagaacacacagcgcaATGCGGCTTGCTGCataccggtcagagtgcccatgctgacccctgtccatcgCCGAAAGCGACTACGATGGGCacctgagcatcagaactggtctgCTGAAttacgttttcttttacatcctgTGGACGGCCAGGTACGTGGGtgtcgtttacctggggaagagatagcaccaggatgcactatgggcagaaggcaagccggcggaggcagtgtgatgctctatgCAGTGTTCTgcgggaaaccttgggtcctggcattcatgtggatgttacgtTGAAATGTACCACTTACCTAAACACCCCTTTATGGCAATGGTAATCCCTAATGgcaatggcctctttcagcaggataatgcgccctgccacattgaaaaactgttcaggaatggtttgatctcaatctgatcaagcatctgtgggatgtgctggacaaacaagtccgatccatggaggccccacctcgcaacttacaggacataAAGGATTTGCTGCAAACGTCTTGGTTCTAGATaccacagaacaccttcagaggtcttgagGAGTCCATGCCTcctcaacaggtcagagctgttttggaggcacaagggggacctacacaatattaggcaggtggttttaatgttatggctgatcggtgtatatattgTGACATTCCAATTTTTGGACAGTAATGATATATCATAATTATACACCACAAATCAGGAAAAAAGCTTCTTTAACCATAAACAAGTGCTATCCCAGAGCTCTCACTCTGAAAAGCTGCTATGATGTTAGTTGTAATAGTTCCCATTCCTTGTCTCATTTGGAACATCATGACTGGCCAACAATTATCATAAATAAGCCCCTGTACCAAGTGTTGCTACTGTAATGACTGGAAACTGAACCTAGTAAATCACAAATGCTGTGCTGTTTAGCTTCTAAAGACACCTCCAGACATGCACAtgctctcactcactcacacacagacacacacagacacaccaacATGTAATCTTAAGCAATAagggagagagaataaaatacACTGTGGCTGGGCTGGCATTTATGTGGGTTTTACCTCTGGGTAAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64073 True 3009 lncRNA 0.43 1 28278492 28281500

Neighbor

gene id symbol gene type direction distance location
myom2b myom2 coding downstream 179036 28067773 ~ 28099456 (-)
mcph1 mcph1,LOC107568906 coding downstream 680445 27562257 ~ 27598047 (-)
agpat5 agpat5,LOC107665182,LOC107717842 coding downstream 718472 27548265 ~ 27560020 (-)
polh polh coding downstream 752550 27518869 ~ 27525942 (-)
LOC113542117 otor coding downstream 774184 27501662 ~ 27504308 (-)
oit3 oit3,LOC107564524,LOC107754765,LOC107660216,LOC107717846 coding upstream 33213 28314713 ~ 28330532 (-)
mcu mcu,LOC107660217,LOC107564525,LOC107702682,LOC107754763 coding upstream 52125 28333625 ~ 28388691 (-)
nolc1 nolc1,LOC107717830 coding upstream 155505 28437005 ~ 28446340 (-)
LOC113542013 NA coding upstream 187456 28468956 ~ 28485759 (-)
LOC113542015 NA coding upstream 213142 28494642 ~ 28496602 (-)
G54293 NA non-coding downstream 2438 28275843 ~ 28276054 (-)
G54287 NA non-coding downstream 10919 28267159 ~ 28267573 (-)
G54276 NA non-coding downstream 29859 28247670 ~ 28248633 (-)
G54229 NA non-coding downstream 40827 28237215 ~ 28237665 (-)
G54204 NA non-coding downstream 102526 28106715 ~ 28175966 (-)
G54298 NA non-coding upstream 8538 28290038 ~ 28290479 (-)
G54271 pde10a,LOC107754764 non-coding upstream 14436 28295936 ~ 28297769 (-)
G54270 NA non-coding upstream 17420 28298920 ~ 28301519 (-)
G54301 NA non-coding upstream 31446 28312946 ~ 28314129 (-)
G54303 NA non-coding upstream 33776 28315276 ~ 28315490 (-)
zgc:163080 tmem14a other downstream 737161 27537769 ~ 27541331 (-)
dst dst other downstream 1082537 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 2368373 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 3542604 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 3626645 24451986 ~ 24651847 (-)
G54269 NA other upstream 151720 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 1597795 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 1830331 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 1871408 30152908 ~ 30161224 (-)
runx3 runx3 other upstream 1916825 30198325 ~ 30253456 (-)

Expression


Co-expression Network