G54725


Basic Information

Item Value
gene id G54725
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29124493 ~ 29184455 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU64518
caggattttatttatttatttttttttagaaatgaaaGCCCTTAAACTCCATTAGTCGCTTAGCAGCAGAGTGAATGTCTCGCACTGTAGTAGATAAGGTCATCAGGGCAGAACAGCGCACTGACACTTGACTAAAAAAATGAGAGTTGTGAAGtcaaaagctgaaaaaaaataaagagctgCAGGAATGTAAGCGCAGAGGGattattcctgaaaagtatgaCTGTAGTGGCTCCAGTTATTTCAATAAGTAGTAGAATTTTACTTGTAAGAGTACCCTTGTTCGAGTAAATATCTTAAGACAGACTTGGTCATTTGTCCCAACTCCTGATTCGTCCATCCTTCATTAGGAACGCCTGTCCAATCTGccgatcatgtggcagcagcgcaatgcatagctcgtgcagatgcaggtcaagagcttatgttcaaatcaaacatcagaatggggaaaactgTGATGTCGGTTGCTTTGggatggttgttggtgccagattaTTCCAGTTTAATTATTTCAGATCTCCTGGgatgttcacacacaacagtctctagagtttagacagaatggtgcaaaaatcAAAGACCATCCAGAGAGAAACACCgtgctgatgagagagagatcagaaggaaggctacggtaactctgaccactctttacagccgtgctgagcagaaaagtgtctcagaatgcacaacacgctAAATCTTGAGagggatgggctacaacagcagacacacacatcaggtCGTTCAGCCAAGACCTGGAATGTGAGGCTACAGTGTGTACGGACTCACCGaacctggacagctgaagattggaataGCGCTATGTTCTACATCACATGGAATGTAGTAGCATTCCTGTTAAGCTGtactgttttgtgtattttggtaTCTAGTACTACCTTTGTAGAGATTTTCAGAGGTTGCATTTCCGTGATGTTCTCTGTCAggcactttgttttttttATTTTGTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64518 True 979 lncRNA 0.42 2 29124493 29184455

Neighbor

gene id symbol gene type direction distance location
trnav-aac NA coding upstream 16579 29107842 ~ 29107914 (+)
btbd9 btbd9,LOC108426139,LOC107724625,LOC107566514,LOC107734308,LOC107667966,LOC107561768 coding upstream 17946 29094690 ~ 29106547 (+)
trnav-cac NA coding upstream 18977 29105444 ~ 29105516 (+)
glo1 glo1,LOC103022823,LOC108426138,LOC107679178,LOC107667967,LOC107734292 coding upstream 31254 29084646 ~ 29093239 (+)
macrod2 macrod2 coding upstream 51533 28522346 ~ 29072960 (+)
fam160b1 fam160b1,LOC107724610,LOC107568115 coding downstream 511822 29696277 ~ 29707979 (+)
smoc2 smoc2,LOC107724603,LOC107679127 coding downstream 607446 29791901 ~ 29829883 (+)
vsir NA coding downstream 724266 29908721 ~ 29925935 (+)
zmp:0000000634 LOC108263435 coding downstream 927851 30112306 ~ 30116143 (+)
zbtb8os zbtb8os,LOC100304789 coding downstream 937561 30122016 ~ 30139085 (+)
G53702 NA non-coding upstream 640595 28483699 ~ 28483898 (+)
G53699 NA non-coding upstream 656510 28467773 ~ 28467983 (+)
G53693 NA non-coding upstream 675629 28448331 ~ 28448864 (+)
G53629 NA non-coding upstream 686656 28436980 ~ 28437837 (+)
G53688 NA non-coding upstream 746230 28374776 ~ 28378263 (+)
LOC113542173 NA non-coding downstream 267441 29451896 ~ 29474301 (+)
G54958 NA non-coding downstream 496071 29680526 ~ 29684999 (+)
LOC113542139 NA non-coding downstream 681301 29865756 ~ 29870830 (+)
G55129 NA non-coding downstream 954820 30139275 ~ 30139776 (+)
G55128 NA non-coding downstream 955769 30140224 ~ 30145109 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other upstream 627887 28466088 ~ 28496606 (+)
G53692 NA other upstream 676182 28447377 ~ 28448311 (+)
pde10a pde10a other upstream 822670 28201035 ~ 28301823 (+)
znf451 znf451 other upstream 1917248 27197909 ~ 27207245 (+)
G53328 NA other upstream 2131782 26985978 ~ 26992711 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 527803 29712258 ~ 29748505 (+)
G55091 NA other downstream 753093 29937548 ~ 29941181 (+)
mgst3b LOC108263214,LOC103043280,LOC108426107,LOC106579764 other downstream 1169848 30354303 ~ 30358454 (+)
LOC113542119 NA other downstream 1295471 30479926 ~ 30486287 (+)
lbh lbh,LOC108263100 other downstream 2367560 31552015 ~ 31567173 (+)

Expression


Co-expression Network