G54855


Basic Information

Item Value
gene id G54855
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29262760 ~ 29263429 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU64653
TGATAGTTCACCCAACATAGGGGAGGAGCAAACATATAAACGCTTACTCAAAAGCCTTCTCTGAAATTTCTCTTGGTGCTCTGTGGGCCCtctttttatgaataaaaaagatTGAAAACAAATTGAAAATGACCTTAATGTTGAGGAGGACCCTGATTATGAGCATCCTCCTCTGATGAGAATGATACTCTTAGCGTTGACCCTCCTGTTGCCTCTCAACCACCAGCAGACACAttaccttccaaaaatgcaaagcTATTGTGGTCCCTCTCCCCACCTTAGTGCTGCTAATGTCATCAAAAATGGTCCCAGCCCCACCAGATACACTGAGGGTGGTATTACACATGGCTGAAGGACTGAATGGTCATAACATTACAtgtgatcatttttttcacattgtatATGCTGGGtgaaaaactgctgaaaaggaaGGTTACCATGTAGGggacaatgagaaaaaaacaagctggagCTTCCCTCTGAGCTTCTTGCAATGAAGAACAAGAAGGTAACATCTTCAGTGTTTTGCCTTCACTGACCGAGCCACTGTCATCTCCTATTGCCccaagaaagggaaaaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64653 True 582 lncRNA 0.43 2 29262760 29263429

Neighbor

gene id symbol gene type direction distance location
trnae-cuc_11 NA coding downstream 60757 29201932 ~ 29202003 (-)
flrt3 flrt3,LOC107705403,LOC107654987,LOC107600562 coding downstream 642735 28610623 ~ 28620025 (-)
ephx5 ephx1,LOC108426104 coding downstream 741931 28515778 ~ 28520829 (-)
LOC113542138 NA coding downstream 757483 28504100 ~ 28505277 (-)
LOC113541930 NA coding downstream 761362 28499606 ~ 28501398 (-)
LOC113541985 NA coding upstream 419116 29682545 ~ 29684864 (-)
zfyve21 zfyve21,LOC106610961 coding upstream 423301 29686730 ~ 29695063 (-)
dact2 dact2 coding upstream 509956 29773385 ~ 29779069 (-)
eif3s6ip eif3l,eif3s6ip,LOC106576896,LOC107676390,LOC107679167 coding upstream 518834 29782263 ~ 29788784 (-)
LOC113542130 NA coding upstream 877517 30140946 ~ 30148924 (-)
G54775 NA non-coding downstream 127091 29133880 ~ 29135669 (-)
LOC117596831 NA non-coding downstream 180794 29077310 ~ 29081966 (-)
LOC117596864 NA non-coding downstream 253957 29003280 ~ 29008803 (-)
G54327 NA non-coding downstream 764872 28496771 ~ 28497888 (-)
G54324 NA non-coding downstream 777515 28484982 ~ 28485245 (-)
LOC113542069 NA non-coding upstream 5667 29269096 ~ 29270020 (-)
LOC113542002 NA non-coding upstream 367572 29631001 ~ 29639350 (-)
LOC113541988 NA non-coding upstream 415982 29679411 ~ 29681726 (-)
G54976 NA non-coding upstream 416694 29680123 ~ 29683525 (-)
G54977 NA non-coding upstream 442314 29705743 ~ 29709036 (-)
G54269 NA other downstream 827349 28433220 ~ 28435411 (-)
zgc:163080 tmem14a other downstream 1721429 27537769 ~ 27541331 (-)
dst dst other downstream 2066805 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 3352641 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 4526872 24661985 ~ 24735888 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 615866 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 848402 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 889479 30152908 ~ 30161224 (-)
runx3 runx3 other upstream 934896 30198325 ~ 30253456 (-)
rsrp1 rsrp1 other upstream 1076970 30340399 ~ 30344538 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G162878 NA non-coding NC_053127.1 CM020924.1 2570566 ~ 2570799 (-)