XLOC_005318


Basic Information

Item Value
gene id XLOC_005318
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20056971 ~ 20120711 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011120
ACAGTACCCCTGGATGAAGTCACCATGTCCCCTGCCAAAGTAAAATGCCCCTCTTGCCATAAGATTGTCACCACTGagattcagtataaacttagcagCAATGCCTTCCTCTTTTGCTGTCTCCTGTCTGTGGTGGGGTGTGTGGCCGGATGTTGCCTTGTCCCCTTCTGTTTGAATCGCTTCAAAGATGTCGCCCACAGTTGCCCGTCCTGCAACAAAGAAATCTGTGCAGTAAACAGGATTTAAAACAGAGTAAAATCTTGACCTGTGAAGTGACTTAAGACAAAATATCCCTGAAGATGTGTCTGGACTGTTGgggatttctctctctctctctctcgttgttCTCTTGACAGAATTTTGTAGTTAATACATACACAGCCAAAAATACATGTACAAACAAATGCAACTATAATCAagttaaacaaataataactgattATTCACATTGCGAAAATTGGCTTTTAGGGTCATATAATCATAGACATCACTAATGGTGGAagaaaggtaacactttattatgatggtccatttgattattagtttactgtctgcttaatatcttttattactgctgctaaacaaacatttaactgagtGTGAGAAATTTGTTAGTTCGTCAACTTACACTAaagccgagttcagactgcatgacttTTAAAGTAATCGtgtcacactgcatgactatctgggctagcgttttgtcgctgctttgttaacacagcaagatggatcagcgacaggggctttcacattgcatgacttgaCAATAGGAAGAGTcgccgacaacttcatccaaactacgtctcacagccaaaaacacgtagtatatcttttgttattaactacataatgagagagaaagaagcctttaatggggtagaaaatgtacatatttgctcacctgattttgaagggaattagccatttctcctcaactttcttttttaactttctgtatgaaacagaCACGTGTGCTCATATCAAacctagtttttcctccatttcttgggttcaaactaaaaatgagcgcttttaaatTCTCCTTCAACCTTCCGCTGACCTGCAGgttcacacacccacacacacaagtgaatgctgctctcttattggctgtaggcgatcgccaatgttattttcagtcagaactcatttcacacggcatgatttgaatcgcagacagctccagatatttagcatgccaaatatctcacaggcatcggcgactcatctgtgattctctcagattgcgtctttgatagttcatactgtgtgattgtcactcacatgcatAAGCCCTTAGATTTgactgtgatttcaggcatttgtcagcgattcCTCAAAACCTGTCGTTGAGTCAAAGTCAGGGATAAAATCATACAGTCTGAACTCGacataaccctaaccccaatcttAACTCCAAtttaacagtctatttataatctaataagaattagttggcatttagatgcaatgtaacttaaactcaacaaatggatcatcaaaataaaatgtgaccggAAGAAATTCACAAATCATTCACTTGATCAACTTGGGGGTTTAATAACCTCCAAAGACTGAATTAACTGATTTCaataaaacaatgcttttgctaTATAGTTACACTACATAGTCGCATACTTAAAGTACTGCTTTGCATATATTCTGAATATGCTGCAGTCATAACTATTGTAGACTGAGAGAGGAATTTGGATAACAATACAAGCCATCTAGacaaaagatgttttgcattGTGTTTTGTAACAATATTAACTGATATTCAAATGAACATGGTCATGTTTGAGTGGCATTGAGGATTCCTGGAGTTTAATGCTAGTTTGCATTCATGTAATAGTCAGGTAAATGAGCTTGAAGAACAGTTAGTTGAACAACACTATTGAATGTCTCTGAAAACAATGTTTCTTTCTTGTACATATTTCTTTTACATAATGGAAGAGGCTGAAGGGCTTTTCACAACTGAAATGATTAATCCTGGGTTGTTATAAACCTTGGGTAAACAGAATCCTAACTAGGGTTAACAATTAATCCAACGTTTCACACTGTAACCATAAATCATTGGCTTATGATCATTATACGCAATGTCATTGTGCTCTGTGACCTGTTTACATAAAGGCTTTAAGTTCTGAAGTACATATTGTTGACTTGTACTGCCTCACTGAAGCAGATTCATTAAGGCAACAGAAGTATGTTCATGCCTTGTCATAATAACCAATatcataacatgtaaaatggaTGTTTTTGTAGAACACGTTACCATGAAGATCTGGAAAGTTTGACCAGCTATATATTCATTAAGGAGCTATAAATGTACTCTTGTCATGTCATAATCATAAGATTTAGGGATGCTCAATATATCGCCATTGGCTGAAAAACGTTTATTAGAGATTCAAGAATAGCGCCGAAACCCTTTTGTAATTGTTAGAAGAGAACCAAACGTTGCGCAGTCAAGACACTCTGTTGTCTGAATAGTAAAAGTTATCAAAAAAAGTAGAAATTCCCATTTTGGTTTAACACAGGATGACCAAACGTTCAAAGTGTGCGGGGCCTCTTTTACAAAAACCTCCATAACTGTGGAAAAGCGTGAACTATCATACCCAAACTCATATGAATGAGCTTGATTAGAGGCCACTGTAAAAAAAGATGTAGCAAGGTCTTACCAAATAGTGGCGCTACAATGCAAAAATGAACATCAAAGCAGTTTTAACGGAGAGACCGCTAGTCTGATTGACCAAGGTGGCACTGGGTCCCCATGGGGTGATATTTTGTTACTTAATTATATAAGCGACTGTAGATAGCAcaatgagtacgtttacatggacactaataatctgattttaatgggattaagacaatactcagattaagagtctaccatgtaaacagcgatttgtTTAATCCGATTAAGTTCATAatagaactaaacagaaatcggattAAGGTTTGTGGAGTATGTAGATTTTAGTCTCATTATTGAAGTAGAGACATGTAAACGCCGCAATCAAGCcattaccatcgtgtaggattttgtgacaggatagtctatatacACACAGCTGTTTAaaactattctctgcacctaccgagttaGTAAAGAATCATAAACACCTGCATCCTGTACActtttccagcagttcatacttgcatttaatatcttgtttgtcacagggggcatgcatgaaatgttcctgcatgaaaatgccaaactgcagttaaagtcgacaaattaaaaaatgaaacaactgaaattacatgaaactccagaggaaatgtagATAGCAGTGATTCAATGATGTACGCCGTACTGATGTACGCCGA
>TCONS_00010208
TTTGCTCAACCGGCTGTAATGGTGGACGACTGAAAGAGAAAAGCGGAGAGAGGCTAAATCTCGAAAATCCTGTCCCGGGTGAAAACACCAGTGTTCGTGGCTCGGAAACAAGCACCAGCCAAAATGGATGAACTCAAACATCAAGTTATGATCAACCAGTTCGTCCTGACAGCTGGATGTGCCGCAGACCAGGCGAAACAGCTTTTGCAAGCGGCACATTGGCAGTTTGAGACAGCCCTCAGTGCCTTCTTTCAAGAGACAAATATCCCTTATGGTCACCATCATCAAATGGGCAGCGGTACTATGAACCCAGAGCTGCCGGAGGCCTCTGAACAGGATGAAGACACCAAAAACCTGTGGAACGTCCTCTACAGGCGACAACAGCTCCAAAACCGCCTTCAGTTTCTACAGGAGATCCAAAAGAAGAACAGAATAGAGGAATGCCATGCAAATGAAGATGGACCTTCAGAACTGGACAGAATAGAAGAGGAGCTAAAGGAGCTGGAACAAAAGGAGAAGGACCTAATTCAGAAAAGAAGCCAATGCTTAACAACAGTATCCACAGACAAAGATCCAATTCAAGCTCCAATCCAAGGACTTTACGTTCTTCCCATTTCTCCTGCAGAACCTATTAATCCTGCCATCATTCTACCAGGTTCTACAGTACCCCTGGATGAAGTCACCATGTCCCCTGCCAAAGTAAAATGCCCCTCTTGCCATAAGATTGTCACCACTGagattcagtataaacttagcagCAATGCCTTCCTCTTTTGCTGTCTCCTGTCTGTGGTGGGGTGTGTGGCCGGATGTTGCCTTGTCCCCTTCTGTTTGAATCGCTTCAAAGATGTCGCCCACAGTTGCCCGTCCTGCAACAAAGAAATCTGTGCAGTAAACAGGATTTAAAACAGAGTAAAATCTTGACCTGTGAAGTGACTTAAGACAAAATATCCCTGAAGATGTGTCTGGACTGTTGgggatttctctctctctctctctcgttgttCTCTTGACAGAATTTTGTAGTTAATACATACACAGCCAAAAATACATGTACAAACAAATGCAACTATAATCAagttaaacaaataataactgattATTCACA
>TCONS_00010209
ATATTTGTGTTTGCTCAACCGGCTGTAATGGTGGACGACTGAAAGAGAAAAGCGGAGAGAGGCTAAATCTCGAAAATCCTGTCCCGGGTGAAAACACCAGTGTTCGTGGCTCGGAAACAAGCACCAGCCAAAATGGATGAACTCAAACATCAAGTTATGATCAACCAGTTCGTCCTGACAGCTGGATGTGCCGCAGACCAGGCGAAACAGCTTTTGCAAGCGGCACATTGGCAGTTTGAGACAGCCCTCAGTGCCTTCTTTCAAGAGACAAATATCCCTTATGGTCACCATCATCAAATGATGTGTACTCCTGCCAACACACCAGCGACGCCACCAAACTTCCCAGACGCACTCACCATGTTCTCGCGACTTAAAGCCTCGGAAAGCTTCAACAGCAGCAGCAGTCCCAGCATGGCCACCTCACCCCCTCCACCCCCAGTCAGCTGGGGCATGGCCCCACCCATGGCCAACCAGCAGAGTTTATGGACTCAGGGCCCGTCCGCCCAACAGACCCACCCACCCCCAGGCTGGCCCTCAGCTGTCAACCAGCAAGCAGCATCTGAACAGAAGGCCAGTGCCGCAATGGAGGCCGAGAGATGAGGGCCTGGACTACCTGTCCTCCTTCCCACCTTCACTGACCCATGGAGCGAGGGTTCGGGGAGGGCTCTCGTTTTTCTCTTTTACTCACCAAACATGGAGGCAGAGAGAGCTACACCAAGAATAACCAAGCAACATGGACATTTACAGAAGAGGAGCGAAAGCCAACAAGAAGGTAATACGCGGAAGAACGAAACAAGCGCACATTGTATTACTAAGAAAgagagcaagttttttttataatgaaagAGTAGATTAACATTTACGGGACTATGATCATTGCGCCTGTGGATTATTTCTGATATTTTCTCAAAGATTGACGTCTAGCATCTAAGGCAGCAACTTTTCTCAACGTTTTCCTTTTGAATTCTTTTATCTGGTGTTCTTTATGCAAGACGTTGCATGTGGATTAGCGATCTGTTTTTTGCGGTTTTTAACTAACTAGTATTCAATGCAAGCGTTcatgtgtacagtgtgtgtgtgtgtgagaaagagagactgACACACTTAAACATTGTATATGGGACTGATCTTTTCTCTCCCCGTTGGATAATGGGACTTTTTCGTACCTCACTGGTCACCTGACACTCTACTCAACCAATCAGGGAATCTTCCTAGTTGAACACACTTTTTTGAACCGGATTTTTCCATCACGCTTTGCTTTATATCTATTAAGCGGTAGCTCACTGATGTCCTCAGAGATTGTCTGAAAATAGATTACGAAAGATCTGGGTGTTTTATAATCATGGTTTGTAGTTTTATTGGAATCTGTCTGGAGGGAGCTTTTTTTCCAGACTGTTGTTTCTTAGTCGGGGAGAGTAAATCCACGCCGCTAAAGCTACATTTGAAACCGGACTACTATACAACATGTTTGTAAGCAGACTTGCCACTTTGCATGACGTATTCACATGTATATCATATTTTGTAGTTTCTTGCTTTTTGGGGGAATTCTACATGAACGCTTTTTGGGGAATTCTGTCTTATTGCTAGTTTTAGTCGAAGATCTCCAATTCAACTTGTGATTCTGGCACCATCTGCTTTTCTATTGCCGTTTATTTCAAATGATGAATccgaagaaagaaagaaaaactcatTTGCTGATCtacaatgttttattttccatttacACCAGTTTCTGATCAAACTTTTTCTTTCGGGGTCCCTTGTTCCCAAATGGTTTTCCATGTATGTTTTCCCCTGTTTGACTGTATTGAGACCATTCCCACAATATTTGTGGACTACCTGATAATTAACTTATCATTGTTTGTGTtcctaaataaatattgtatgtcCTATGATATGA
>TCONS_00010210
TTTGCTCAACCGGCTGTAATGGTGGACGACTGAAAGAGAAAAGCGGAGAGAGGCTAAATCTCGAAAATCCTGTCCCGGGTGAAAACACCAGTGTTCGTGGCTCGGAAACAAGCACCAGCCAAAATGGATGAACTCAAACATCAAGTTATGATCAACCAGTTCGTCCTGACAGCTGGATGTGCCGCAGACCAGGCGAAACAGCTTTTGCAAGCGGCACATTGGCAGTTTGAGACAGCCCTCAGTGCCTTCTTTCAAGAGACAAATATCCCTTATGGTCACCATCATCAAATGATGTGTACTCCTGCCAACACACCAGCGACGCCACCAAACTTCCCAGACGCACTCACCATGTTCTCGCGACTTAAAGCCTCGGAAAGCTTCAACAGCAGCAGCAGTCCCAGCATGGCCACCTCACCCCCTCCACCCCCAGTCAGCTGGGGCATGGCCCCACCCATGGCCAACCAGCAGAGTTTATGGACTCAGGGCCCGTCCGCCCAACAGACCCACCCACCCCCAGGCTGGCCCTCAGCTGTCAACCAGCAAGCAGCATCTGAACAGAAGGCCAGTGCCGCAATGGAGGCCGAGAGATGAGGGCCTGGACTACCTGTCCTCCTTCCCACCTTCACTGACCCATGGAGCGAGGGTTCGGGGAGGGCTCTCGTTTTTCTCTTTTACTCACCAAACATGGAGGCAGAGAGAGCTACACCAAGAATAACCAAGCAACATGGACATTTACAGAAGAGGAGCGAAAGCCAACAAGAAGGTAATACGCGGAAGAACGAAACAAGCGCACATTGTATTACTAAGAAAgagagcaagttttttttataatgaaagAGTAGATTAACATTTACGGGACTATGATCATTGCGCCTGTGGATTAGCGATCTGTTTTTTGCGGTTTTTAACTAACTAGTATTCAATGCAAGCGTTcatgtgtacagtgtgtgtgtgtgtgagaaagagagactgACACACTTAAACATTGTATATGGGACTGATCTTTTCTCTCCCCGTTGGATAATGGGACTTTTTCGTACCTCACTGGTCACCTGACACTCTACTCAACCAATCAGGGAATCTTCCTAGTTGAACACACTTTTTTGAACCGGATTTTTCCATCACGCTTTGCTTTATATCTATTAAGCGGTAGCTCACTGATGTCCTCAGAGATTGTCTGAAAATAGATTACGAAAGATCTGGGTGTTTTATAATCATGGTTTGTAGTTTTATTGGAATCTGTCTGGAGGGAGCTTTTTTTCCAGACTGTTGTTTCTTAGTCGGGGAGAGTAAATCCACGCCGCTAAAGCTACATTTGAAACCGGACTACTATACAACATGTTTGTAAGCAGACTTGCCACTTTGCATGACGTATTCACATGTATATCATATTTTGTAGTTTCTTGCTTTTTGGGGGAATTCTACATGAACGCTTTTTGGGGAATTCTGTCTTATTGCTAGTTTTAGTCGAAGATCTCCAATTCAACTTGTGATTCTGGCACCATCTGCTTTTCTATTGCCGTTTATTTCAAATGATGAATccgaagaaagaaagaaaaactcatTTGCTGATCtacaatgttttattttccatttacACCAGTTTCTGATCAAACTTTTTCTTTCGGGGTCCCTTGTTCCCAAATGGTTTTCCATGTATGTTTTCCCCTGTTTGACTGTATTGAGACCATTCCCACAATATTTGTGGACTACCTGATAATTAACTTATCATTGTTTGTGTtcctaaataaatattgtatgtcCTATG

Function

GO:

id name namespace
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009070 serine family amino acid biosynthetic process biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006563 L-serine metabolic process biological_process
GO:0006564 L-serine biosynthetic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:1901265 nucleoside phosphate binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051087 chaperone binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-040718-191 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human UBALD1 (UBA like domain containing 1).

Ensembl:

ensembl_id ENSDARG00000002362

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011120 False 3336 lncRNA 0.38 2 20056971 20065827
TCONS_00010208 False 1108 mRNA 0.45 7 20059859 20120702
TCONS_00010209 False 1900 mRNA 0.44 3 20098845 20120711
TCONS_00010210 True 1768 mRNA 0.45 4 20098851 20120702

Neighbor

gene id symbol gene type direction distance location
XLOC_005317 shisa9a coding downstream 191386 19792281 ~ 19865585 (-)
XLOC_005316 maff coding downstream 710293 19340786 ~ 19346678 (-)
XLOC_005315 si:ch211-141o9.10 coding downstream 774851 19272963 ~ 19282120 (-)
XLOC_005314 cdc42ep1a coding downstream 806117 19240610 ~ 19250854 (-)
XLOC_005313 zc3h7bb coding downstream 871106 19158832 ~ 19185865 (-)
XLOC_005319 CR352324.1 coding upstream 68458 20189169 ~ 20189286 (-)
XLOC_005320 rhbdf1b coding upstream 106684 20227395 ~ 20303438 (-)
XLOC_005321 NA coding upstream 194284 20314995 ~ 20334709 (-)
XLOC_005322 hbbe3 coding upstream 218702 20339413 ~ 20340543 (-)
XLOC_005323 hbbe2 coding upstream 229154 20349865 ~ 20350629 (-)
XLOC_005303 AL772266.1 non-coding downstream 1318442 18738413 ~ 18738529 (-)
XLOC_005298 NA non-coding downstream 1602564 18453207 ~ 18454407 (-)
XLOC_005295 NA non-coding downstream 1829241 18224534 ~ 18227730 (-)
XLOC_005291 NA non-coding downstream 2329431 17721801 ~ 17727540 (-)
XLOC_005289 dre-mir-2192 non-coding downstream 2350070 17706792 ~ 17706901 (-)
XLOC_005327 SLC16A6 non-coding upstream 454929 20575640 ~ 20584439 (-)
XLOC_005332 CR753823.1 non-coding upstream 1449072 21569783 ~ 21569899 (-)
XLOC_005335 NA non-coding upstream 2043319 22164030 ~ 22220870 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_01824468_01849446 NA coding CI01000063 null 1822854 ~ 1849454 (+)
rainbow trout (Oncorhynchus mykiss) G125729 NA non-coding NC_048566.1 CM023220.2 25465102 ~ 25465351 (+)
rainbow trout (Oncorhynchus mykiss) G1873717 LOC106609588 unknown NC_048587.1 CM023241.2 48040594 ~ 48042832 (+)
bowfin (Amia calva) AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 misc CM030135.1 CM030135.1 9239812 ~ 9258202 (-)