LOC113542119


Basic Information

Item Value
gene id LOC113542119
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30479926 ~ 30486287 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU65162
GCACTCGGAGGTGCAGCTGGAGCTTCAGCTGGAGGTTCAGCTTGAGGGTGTTTGTCCACAGTTTAATATCGTGTTTCCGGCGTTGTGTTTGCTGGGGGATTTGTATTTCACCCTGGTGGACgcagagcagacagagagagagagggagagagagagagagaacctgtTTCGTTATCTCGCCTCACCAGTGCCTGACTGCAGTGTGGACATCATGGTCTCTCCAACAGTGATAACTGCTGCGGCTGGAGCAGTCTGCTCCGTGCTGTTAGCTCCATTTGTGATTTCGGCTGCGGGTTTCACCTCCAGTGGCATCGCTGCGGGATCCGTTGCATCATCAATGATGTCATCAGCAGCCATCGCTAATGGCGGCGGTGTGGCATCGGGAAGTCTCGTCGCCGTCTTGCAGTCTTTTGGTGCGGCCGGTCTTACTAACGCTGCCACAGCTGCCGTGGCGTCTGCAGGAGCCGCAGTCGGTGGAGTGGCCGGGTGGGTGGCCAGCAATCTCAGTCGCTGAACCCTTCTTTTCAACACAAGAAAAACTTGGAAAAACATTATGTGCTTTCTTGTGGCTTAAATAAACTTGAATCAGTCATCCTAA
>XM_026939460.2
ATCGACGCACTCGGAGGTGCAGCTGGAGCTTCAGCTGGAGGTTCAGCTTGAGGGTGTTTGTCCACAGTTTAATATCGTGTTTCCGGCGTTGTGTTTGCTGGGGGATTTGTATTTCACCCTGGTGGACgcagagcagacagagagagagagggagagagagagagagaacctgtTTCGTTATCTCGCCTCACCAGTGCCTGACTGCAGTGTGGACATCATGGTCTCTCCAACAGTGATAACTGCTGCGGCTGGAGCAGTCTGCTCCGTGCTGTTAGCTCCATTTGTGATTTCGGCTGCGGGTTTCACCTCCAGTGGCATCGCTGCGGGATCCGTTGCATCATCAATGATGTCATCAGCAGCCATCGCTAATGGCGGCGGTGTGGCATCGGGAAGTCTCGTCGCCGTCTTGCAGTCTTTTGGTGCGGCCGGTCTTACTAACGCTGCCACAGCTGCCGTGGCGTCTGCAGGAGCCGCAGTCGGTGGAGTGGCCGGGTGGGTGGCCAGCAATCTCAGTCGCTGAACCCTTCTTTTCAACACAAGAAAAACTTGGAAAAACATTATGTGCTTTCTTGTGGCTTAAATAAACTTGAATCAGTCATCCTAA

Function

GO:

id name namespace
GO:0005520 insulin-like growth factor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65162 False 598 TUCP 0.54 5 30479932 30486287
XM_026939460.2 True 604 mRNA 0.54 5 30479926 30486287

Neighbor

gene id symbol gene type direction distance location
eif3s10 eif3a,eif3s10 coding upstream 895 30467318 ~ 30479031 (+)
LOC113542132 NA coding upstream 33954 30439938 ~ 30445972 (+)
ldlrap1b ldlrap1,LOC107597650,LOC107561785 coding upstream 41116 30401301 ~ 30438810 (+)
maco1b tmem57,tmem57b,LOC107561778 coding upstream 84192 30378525 ~ 30395734 (+)
tmem50a tmem50a,LOC107667962,LOC107724601 coding upstream 112507 30360385 ~ 30367419 (+)
emx2 emx2,LOC107733718,LOC106924208 coding downstream 5770 30492057 ~ 30499080 (+)
ccdc172 LOC108263697,LOC108262977 coding downstream 523988 31010275 ~ 31127169 (+)
LOC113541899 LOC108262175,LOC102793317,LOC108426474 coding downstream 679581 31165868 ~ 31487447 (+)
LOC113541944 NA coding downstream 1022310 31508597 ~ 31517360 (+)
sh2d4ba NA coding downstream 1049672 31535959 ~ 31545817 (+)
G55292 NA non-coding upstream 76783 30402887 ~ 30403143 (+)
G55287 NA non-coding upstream 82628 30381725 ~ 30397298 (+)
G55283 LOC108263215 non-coding upstream 104438 30373851 ~ 30375488 (+)
LOC117596843 NA non-coding upstream 185592 30228211 ~ 30294334 (+)
G55152 NA non-coding upstream 248475 30227037 ~ 30231451 (+)
G55334 NA non-coding downstream 132792 30619079 ~ 30623146 (+)
G55468 NA non-coding downstream 199630 30685917 ~ 30686155 (+)
G55486 NA non-coding downstream 216349 30702636 ~ 30702842 (+)
LOC117596892 NA non-coding downstream 332291 30818578 ~ 30834418 (+)
LOC113541955 NA non-coding downstream 377131 30863418 ~ 30871779 (+)
mgst3b LOC108263214,LOC103043280,LOC108426107,LOC106579764 other upstream 121472 30354303 ~ 30358454 (+)
G55091 NA other upstream 538745 29937548 ~ 29941181 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other upstream 731421 29712258 ~ 29748505 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other upstream 1983320 28466088 ~ 28496606 (+)
G53692 NA other upstream 2031615 28447377 ~ 28448311 (+)
lbh lbh,LOC108263100 other downstream 1065728 31552015 ~ 31567173 (+)
G56222 NA other downstream 1297053 31783340 ~ 31796326 (+)
ppp2r5eb ppp2r5e,LOC102786035 other downstream 1371219 31857506 ~ 31933629 (+)
kcnh5b kcnh5,kcnh5b,kcnh5a,LOC107736800,LOC107683602,LOC107654906,LOC107743971,LOC108434995,LOC107602925 other downstream 1447972 31934259 ~ 31989051 (+)
zfyve26 zfyve26 other downstream 1998660 32484947 ~ 32506773 (+)

Expression


Co-expression Network