G55400 (eif3a)


Basic Information

Item Value
gene id G55400
gene name eif3a
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30472604 ~ 30477610 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU65284
CCCAGAGGTTTCCAAGGCTTGGAGTCATCACCGCCCCTCCTGCCTCCTCTCTCGTCGTCACCGCCGCCGCCTCTCCTAGGACCCCAGTCATCATCAGCACCACGCCTGGAGCCTCTGGGCTCGTCCAAGCCACGCCGAGGACCACGATCATCATCAAATCCCCTTCTAGGTCCACGATCGTCGTCCATACCGCGTCTGGGGCCGCGCTCGTCGTCTCTCCTGTGGCCGCGCTCATCGTCATAGCCACGCCTGGGACCGCGATCGTCATCAAAACCTCTTCTGGGTCCACGGTCATCGTCAAAGCCCCTACGTAGGCCTCGGTCATCTGAAGGTCCACGGCGGGAACCCTCTCCGCTTCTTTTGAAGGGTGGCTCACGCTCCTCACGCTCGTGTTCTTCACGCCCCTCCTGACGCCAGTCTTGTCAGAAACGGGGCGTCTCCACTCCGAGTCACCTGTCTCTGTACGCCTCCTCCAGCCGCCCTCTTCCTTTTCACCCCAGTCttgcTGGACTTCTCCTCCTGGGGCCttctcatctcctcctccttGCGCCGTTCACGTTCCTCGATTTCCTGCTGCCTGGCTCGCTGTTTCCTCTCCTGCTCCTCTAGCTTGCGCAGGCGCTCCTGGTACTcacgctcctcctcctccctctgctcctgctcctgaCGCTCACGCTCCTCACGCTCCTTTTTCAGCTGTTCCTCCCGGATCCTCTGGGCCTCCTCCTCTTTCTGGCGATAGTAGGCGTTTCGTCGCTCCTCTTTGCGCTGTTTCTTGCGCTCTTCGAGACGTTTCTTCCTCTCCTCAACCAAGCGCTCCTGGAACTGCTTCAGTTTTTCCTCGTAGATGAAGCTGCGGGCAGCGGTTATTTTAGATACGAAGTTCTCCTTATCCTCCATCATCCTGGACATCCTCTTTTTGTGCTCAAGAGCCTTCTCACGCTCCACTTTCATGTTGCTGATcctctcctcctcctggaGCTCCCACAGCTCCATATCTTTGATGCGCTGTTCCTCATAGGCCTTTTTAATCATGGGGATTTCCTCCAAACGCTTCGCCCTTTCAAAGTAGTCGAtCTTCTTTTCCTGATTCTTTAAGCGCTCCTGcagctctttcttttctttctcgaGCTGCTCCACCTGTTTGGCCATGATGAAGTCAGGGTCCAACTCCTCCAGATCCTCAATGTCAATGTCTTTAAATGCTTTGGCTCCCAGCTCAGTCTTCTTGATCTGCTCGAGGCGCTCGCGCACAGTCTTCTTCTTGATCTGCTCGTGCTCCTGCATGATGCgctccttctccctctccttgGCCTCTTGGCGCAGGCGCTCCTCCTCGGCCTTGCGCACCTTCTGGAGCTCAGCCTCCCGctgctccagctcctccttCTCGCGCTGAATGTTCAGGCTCTCCAGACGCTCCTTGCGCTCCTCGATGGTCTGGCGACGAGCCAGGATGCGCTGGTGCTCCTTACGGGCATTTTTAAGATAGGCAGTGGTGGCCTGCTGTCTCTGCTCCTCTCCGTTCTTGC
>TU65286
TGAATTACAAGCCAAGGCCACGAGGTGCTAAAAATCTAATCCACACTCCTCTAAACATCaatttgttttaacattttggcATGCCTGTGGGGAAAAACCTGAAGGGGAACATGCCAGAAGAagcaccagagagagagacagggagcaaagcgtgtgtgtgtgtgtgtgtgtgtgtttactttgcTGGACTTCTCCTCCTGGGGCCttctcatctcctcctccttGCGCCGTTCACGTTCCTCGATTTCCTGCTGCCTGGCTCGCTGTTTCCTCTCCTGCTCCTCTAGCTTGCGCAGGCGCTCCTGGTACTcacgctcctcctcctccctctgctcctgctcctgaCGCTCACGCTCCTCACGCTCTTTTTCAGCTGTTCCTCCCGGATCCTCTGGGCCTCCTCCTCTTTCTGGCGATAGTAGGCGTTTCGTCGCTCCTCTTTGCGCTGTTTCTTGCGCTCTTCGAGACGTTTCTTCCTCTCCTCAACCAAGCGCTCCTGGAACTGCTTCAGTTTTTCCTCGTAGATGAAGCTGCGGGCAGCGGTTATTTTAGATACGAAGTTCTCCTTATCCTCCATCATCCTGGACATCCTCTTTTTGTGCTCAAGAGCCTTCTCACGCTCCACTTTCATGTTGCTGATCTAATACAGATGTGCACAATTACACATTGTGAAATAACATCATAAACATCGTCCAAATTTTCCCTATAATCACTACAGATGCCTTTCTTCACATGCACGTTCACATTCACCTCTCTACTTTCCAGCTGAAAATAACTGGAGTAACAAAATTTACCTTCTTAAGCAAAGCAAATATGTCTGA

Function

symbol description
eif3a Enables RNA binding activity. Contributes to translation initiation factor activity. Involved in IRES-dependent viral translational initiation; formation of cytoplasmic translation initiation complex; and viral translational termination-reinitiation. Located in cytosol; nucleolus; and nucleoplasm. Part of eukaryotic translation initiation factor 3 complex.

NR:

description
PREDICTED: plasma membrane calcium-transporting ATPase 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65284 True 1532 lncRNA 0.58 8 30472604 30477610
TU65286 False 821 lncRNA 0.48 3 30474736 30475855

Neighbor

gene id symbol gene type direction distance location
LOC113542134 LOC108263607 coding downstream 14484 30447258 ~ 30458120 (-)
rhd LOC108263215 coding downstream 95555 30368672 ~ 30377049 (-)
eif2ak2 NA coding downstream 120310 30345121 ~ 30352294 (-)
chp1 chp1,LOC107724623,LOC107734301 coding downstream 297484 30163347 ~ 30175120 (-)
LOC113542130 NA coding downstream 323680 30140946 ~ 30148924 (-)
LOC113542166 rab11fip2 coding upstream 145639 30623249 ~ 30642158 (-)
fam204a fam204a coding upstream 227404 30705014 ~ 30719700 (-)
LOC113541964 NA coding upstream 268622 30746232 ~ 30753678 (-)
trnag-gcc_2 NA coding upstream 277796 30755406 ~ 30755476 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding upstream 443295 30920905 ~ 31006462 (-)
G55351 NA non-coding downstream 58135 30355571 ~ 30414469 (-)
LOC113541972 NA non-coding downstream 71208 30397412 ~ 30401396 (-)
G55349 NA non-coding downstream 85067 30347170 ~ 30387537 (-)
G55270 NA non-coding downstream 132754 30339477 ~ 30339850 (-)
G55220 NA non-coding downstream 309634 30162751 ~ 30162970 (-)
LOC113542125 NA non-coding upstream 26726 30504336 ~ 30618187 (-)
G55449 NA non-coding upstream 141567 30619177 ~ 30623205 (-)
trnag-gcc_3 NA non-coding upstream 374327 30851937 ~ 30852007 (-)
trnag-gcc_4 NA non-coding upstream 382826 30860436 ~ 30860506 (-)
G55992 NA non-coding upstream 845544 31323154 ~ 31323464 (-)
rsrp1 rsrp1 other downstream 128066 30340399 ~ 30344538 (-)
runx3 runx3 other downstream 219148 30198325 ~ 30253456 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other downstream 311380 30152908 ~ 30161224 (-)
G55209 LOC108263435 other downstream 349782 30111831 ~ 30122822 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other downstream 361443 29879295 ~ 30111161 (-)
LOC113541990 NA other upstream 1068291 31545901 ~ 31548633 (-)
G56150 lclat1 other upstream 1085945 31563555 ~ 31600685 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other upstream 1200773 31678383 ~ 31830932 (-)
G56272 NA other upstream 1350204 31827814 ~ 31829484 (-)
G56303 NA other upstream 1359572 31837182 ~ 31838235 (-)

Expression


Co-expression Network