G55449


Basic Information

Item Value
gene id G55449
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30619177 ~ 30623205 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU65343
aaatattttaagtcaaattcAGTTTTTacatacaaatgcaaataatggAATACATTGTATTTCAAAACTTGATATACAACTTCAAAATATAGCATAACATTTTTCCAagttacaaaattaaaattcaaatcctAGTGACAAAAATTCTAGCTGTGACTTCGATGGATTAAACAATGTTGAATTGTCCAAAATTGTTTATGCTGGCATATCTGGGATGACGTGCGCATTTTCCAAAGATCTTTTAAAAGACGTATGCACGTTTCCCAGTTAAACCTCGGCCTGTTGAGTCTGACTCAGACTGATGTGCCAGATTTATGAGAGTGAACATGAAGTAGTAACACGAAACCATCTTTTAACCCGTATGTTCACCCCATCAGACAGCGTGTATGACCCACTGTCATTGCTTGTGTAGGTGATTTATTAAactaaaaatgtctttaaagtATTCACAAagtattcaaaattcaaaagttacttttcaaaattaaaaaaaatttactttatgcccatttttgattattattaatataatatatgcacTTTTAATTAGGTACTTAAATACAATTAGATAATGATTTTGTAATTTGCCACTAAAACATGTAGATGATTGTTTGAGGCAAATTCACTTCATTagcttatttgtttattttttattacagtatatagatTGTTATAGATGGTTGGCATTTATGTTTGaggggattttttttacacactgttttatGGGCTAATGTGAAATATGTGTTTTATGGTTGAAAACGTTGGATAGTGTTATATCAAAACATCATATGACTAGATCATAAAGTTATAACTTACGAACTAGCACCAAGCAGAACGCTGCTGAGGTTTAAACCACTATTTTAAACCACTATACAAGTCGTACCGCTAGCTGGCCGCTGTGACGGTAGTGGATCCAAGACAAACTTGTAGTCGACTAAATATCCAACACTTAAGTAATTTTTGCTCTTTTAGTTTCATTAAAACCAATTTTTTGAAGTAAATGGTGATGGTAGCACACCCTTAGATTATCATCGGTTGCTTGtaataacattataatttatttaaacacaacatATTTACAGATGTGGATGCTATTTCTTCTGCAGctgtatattttgtgtaatcATGATTTTGGgaatatatttttcctttagTTGTGGTATTTTTGAATCAAAAGAGTTGTACacaaagctgcaaaaaaaagtaaataaagtctCACTTAAATAGAATGGAATaggtaattaatatttataataaaatgaatacagCACATCTTGAATGGACAAACaagtattaaacaaaaatggagCAGTGAACTTTAATCtttgattcatttctttaatttaaaagaacTTTAATCTCCAGTTTGAGGAAACGCCACTGGCTTTTCACTCACTTTCCCAACTTTAATATGTTATATGAAAGCTGGGAATCTATGAATTTAATTCCATCCTATGATGGACCCCTAAATCAAatctggaaaatgaaaaaaatggtaaaaatttGAACATCATAGATGATGGCGTGCTAGACAGCACAGGgtagtgtatataaaattatactgaGGCAGCCATAAGTATTGCATCTACTCATTTTTTCACTGGCTTAGAAAGATTTACGTATGGTTTACGAAATGTTTTGCACACTTCATTAGTGCCACctgcagtgttacagtgttacattttcctctttttattaaatgtaaattgatGTCAATTTGACAAATTTGTGAATATTTGCAAACATCAAGCAAACCAAAATCTTTCACTAaggaaaatgcattttttttctctgatgtgTTCACAATTTGAGTTTTATTCTAAAGAAAATGTTCACACGAATTGAATTTACACTGTAAACGAATGTTTCAGCTGCTGTCTTGTGTTTGACGTTAAGAATCGTCTTCCACGTGTCTGTAAAACAGCTGTACAGCTGTTGGTCggttgtgtgtaaatttatacagTACTTCCATGTACAGTAAATTCTTTTTGTTTccgttgttttgtttttttttcttattcactATGCATCTTGGTACGGAGCTGCTGTTTTATACTCTGAATGTATTTCGATCAATCAGCAAAGTCTGTATTCACAAATATGTAATTGTTTTTACTTAAATATtggtttattttgaataatgCTGATTATAAACTGTATTGTTCGATCAATTCACAGCATGTTAAAGAGGAATGTTAGTCTTAATTCTGTCCACTCAGCTATATCTATACCACGATATCATTAAAATGCCATGTGTCATATACACAACGGAAAAAATGTCCCATTCGTATTGCTAGAGCCAAAacaagtttttctttctttctttctttctttctttcatgtgtTCATCACTTTTATTATTAGATGTGTACATATAGTGTCGTAAAAAGAGTCGTTCCATGTGATGTCACATCCATAACTGTgctacataaggaataaaacaaagcaCAGCGTggtgttgtaggaaaataatcaactacagcatgccacaaaatgttttattccatttacattacaccacagcaatttttaatttattgctgaacatgtcatgctttttatcgatttatacttacattttatgttataaaacatccatgaaacaagattgatcctgttatcacttattcACAAgtgatttattgtgttttcaaaacatttatGTGGAATGTCCGCTATACAAATCCCTGCGTATGTTATTGCCATAGAAATgacaacatattagaaagagtgcattactATGAAcctgtataaaaaataataattaataaaataaaagattcaacaccttctgaccaatcagaatcaagaattcgaCAGTGCTGTGGCATGAATATTTCTAATATGTACATGAATTTTGGAAATTGATTTGTGTTCTCCCTGAGAGGTCATGTGACCCAAAATGTTGGCTCAATAATGCTAAACTTGTGCACACTGCGAGTCACAAATTTCTCTGTACTAAAATTTgttgatgattattttaatacttaagAAGAATTGTGTGATAAAGTGTGAAAATTTAGGCTGAAAATTTCGTTCCTAAAGCAAGAAACTTGCAACAGACTTTCGACTGTTCCAATAAACTAGTAACTGATGCAAGGATGAAACATAATTAAAACTCTATTCCACAACTTAGCAGTTTATACACTCacttaaaaaatctttttttaaattattttgaaaattcCTGTTTACTATTTCCATCCTCTAAAACCACCATGcctttttaattcatatttttctttcatttaacttgtgtgtttttctgacaTCAACTtacagatgatttttttaatgatggttATTATGATAAATATTGCTATTGGTACTATTGCTACTATGAAGGGCTGTTACAAGAAAAGTCTccaaaaagtgttcattttcgTCATATTTGTATAGTATTTCCCACCCTTCCAGGTGTTATTCAAATCCTACTCGCCAtgcataaatatgaatattcacTTTGTGCATGCAAAAATCACAATGCACCGAGTTTAACCTGCATTAATGAGCAACAATTTTcattgcatttctttttttcaatcaaTTTCCTTTTCTCTTAAGATGCAAAAAACCTCCGATACTGTGATTGAACTTCACTGTTATCACTTTAATCACATTCAGTGTGTACCTTCTTGTAAATTAGACCATAATCATGTTAGCTGATTCAGTCCTGATTCAGTGAGTCATTTAGAAAGGTACGTTTATTTCCTGAAtcatgaagttttttttttttttacattttcaaacactTGAAATCTAATATAATCCAATAAATCTGTACAGTATGTGACACTATTAGAGTGATATAGAATCTCccctgatttttcttttcttttttttttttaataaatggaagtatcacacatttatttatgactTACCCCATCTTACATTCCTCCCCATATTCTAGGCATGTGGCATGAacgaaaaaaaagaagagtgtTAGTGTTAGGAAGGAGTGATTaattgtaatgcatttttttggACCACTGTATAGGAAGCACATGATTGTACTATCCTTTTCAA

Function

NR:

description
splicing factor 3A subunit 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65343 True 4029 lncRNA 0.31 1 30619177 30623205

Neighbor

gene id symbol gene type direction distance location
LOC113542134 LOC108263607 coding downstream 161057 30447258 ~ 30458120 (-)
rhd LOC108263215 coding downstream 242128 30368672 ~ 30377049 (-)
eif2ak2 NA coding downstream 266883 30345121 ~ 30352294 (-)
chp1 chp1,LOC107724623,LOC107734301 coding downstream 444057 30163347 ~ 30175120 (-)
LOC113542130 NA coding downstream 470253 30140946 ~ 30148924 (-)
LOC113542166 rab11fip2 coding upstream 44 30623249 ~ 30642158 (-)
fam204a fam204a coding upstream 81809 30705014 ~ 30719700 (-)
LOC113541964 NA coding upstream 123027 30746232 ~ 30753678 (-)
trnag-gcc_2 NA coding upstream 132201 30755406 ~ 30755476 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding upstream 297700 30920905 ~ 31006462 (-)
LOC113542125 NA non-coding downstream 990 30504336 ~ 30618187 (-)
G55400 eif3a non-coding downstream 141567 30472604 ~ 30477610 (-)
G55351 NA non-coding downstream 204708 30355571 ~ 30414469 (-)
LOC113541972 NA non-coding downstream 217781 30397412 ~ 30401396 (-)
G55349 NA non-coding downstream 231640 30347170 ~ 30387537 (-)
trnag-gcc_3 NA non-coding upstream 228732 30851937 ~ 30852007 (-)
trnag-gcc_4 NA non-coding upstream 237231 30860436 ~ 30860506 (-)
G55992 NA non-coding upstream 699949 31323154 ~ 31323464 (-)
G56173 NA non-coding upstream 1009890 31633095 ~ 31633326 (-)
LOC117596876 NA non-coding upstream 1033846 31657051 ~ 31675951 (-)
rsrp1 rsrp1 other downstream 274639 30340399 ~ 30344538 (-)
runx3 runx3 other downstream 365721 30198325 ~ 30253456 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other downstream 457953 30152908 ~ 30161224 (-)
G55209 LOC108263435 other downstream 496355 30111831 ~ 30122822 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other downstream 508016 29879295 ~ 30111161 (-)
LOC113541990 NA other upstream 922696 31545901 ~ 31548633 (-)
G56150 lclat1 other upstream 940350 31563555 ~ 31600685 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other upstream 1055178 31678383 ~ 31830932 (-)
G56272 NA other upstream 1204609 31827814 ~ 31829484 (-)
G56303 NA other upstream 1213977 31837182 ~ 31838235 (-)

Expression


Co-expression Network