G55992



Basic Information


Item Value
gene id G55992
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31323154 ~ 31323464 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU65916
CCAGCAACTAAATTTTTCACTTGGCCATTTGCAATTCGGCCATTTTCCAATTTTATGGCCTGTCCTGAGAACAAAAATCTGGCTTAAGACGAAACAGTGTTCTCCAAAGTTATCCGTGATGAACAAAGGacttaaactttatttaacactttggggtgtgctgatgtaggaaaataattatttatttagGGAAGACACATCATAacctttatc

Function


GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption
ko04966 Collecting duct acid secretion

RNA


RNA id representative length rna type GC content exon number start site end site
TU65916 True 213 lncRNA 0.36 2 31323154 31323464

Neighbor


gene id symbol gene type direction distance location
si:ch1073-126c3.2 NA coding downstream 297309 31022661 ~ 31025845 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding downstream 316692 30920905 ~ 31006462 (-)
trnag-gcc_2 NA coding downstream 567678 30755406 ~ 30755476 (-)
LOC113541964 NA coding downstream 569476 30746232 ~ 30753678 (-)
fam204a fam204a coding downstream 603454 30705014 ~ 30719700 (-)
LOC113541870 LOC108263097 coding upstream 195576 31519040 ~ 31524900 (-)
slc30a10 LOC108263333 coding upstream 290138 31613602 ~ 31620331 (-)
gphb5 gphb5 coding upstream 673045 31996509 ~ 32006650 (-)
esr2b esr2 coding upstream 807983 32131447 ~ 32188847 (-)
jag2a LOC108263062 coding upstream 868386 32191850 ~ 32230995 (-)
trnag-gcc_4 NA non-coding downstream 462648 30860436 ~ 30860506 (-)
trnag-gcc_3 NA non-coding downstream 471147 30851937 ~ 30852007 (-)
G55449 NA non-coding downstream 699949 30619177 ~ 30623205 (-)
LOC113542125 NA non-coding downstream 704967 30504336 ~ 30618187 (-)
G55400 eif3a non-coding downstream 845544 30472604 ~ 30477610 (-)
G56173 NA non-coding upstream 309631 31633095 ~ 31633326 (-)
LOC117596876 NA non-coding upstream 333587 31657051 ~ 31675951 (-)
G56279 NA non-coding upstream 405309 31728773 ~ 31730112 (-)
G56271 NA non-coding upstream 493789 31817253 ~ 31827134 (-)
G56315 NA non-coding upstream 521573 31845037 ~ 31846195 (-)
rsrp1 rsrp1 other downstream 978616 30340399 ~ 30344538 (-)
runx3 runx3 other downstream 1069698 30198325 ~ 30253456 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other downstream 1161930 30152908 ~ 30161224 (-)
G55209 LOC108263435 other downstream 1200332 30111831 ~ 30122822 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other downstream 1211993 29879295 ~ 30111161 (-)
LOC113541990 NA other upstream 222437 31545901 ~ 31548633 (-)
G56150 lclat1 other upstream 240091 31563555 ~ 31600685 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other upstream 354919 31678383 ~ 31830932 (-)
G56272 NA other upstream 504350 31827814 ~ 31829484 (-)
G56303 NA other upstream 513718 31837182 ~ 31838235 (-)

Expression



Co-expression Network