G56150 (lclat1)


Basic Information

Item Value
gene id G56150
gene name lclat1
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31563555 ~ 31600685 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU66090
CGGCTGAAAAGGTAGATATTTATTGCAGCATTGGTCTTAACAGCATGAAGAAAATGACAGTGACTGAAAATTATAGTGTACCTGAGGATAGCGTGAGACTCACAAGCAAAAACATGAcatataaatgaagaaaaaacaaaaagagaacaaaTGTGTGTATTAGGACCTGACCGATATTATATCCTATAATGCACCTATAATGTTCTATAGGCAAACTACATTCATAAACATGATGCGATTCTGAATGACCACTAACAGCAGGTAGACTGAACGCTACAGCATTCAGAAGAGCGACTGTtctcacgtgtgtgtgagagaaggtgTAGTTATAATCTactggatggctgtggcatcgttaGGACCCACACTTTAAATCTCTTGTTGATGGAAAGTTCTTTGAGAATATAGTAAGATTAGTGTATAGTAAGCATTCATGCTACTGGAAGCCTGTGGTTTTATGCTCCTGATCTCTGAGTTCTCGAAATTCTTTTCCACTCATAACCTGAATATGAATAAAGCTGCATTTGTATGTCTAGGGACTAATTTtaagctatatatagctacatTCTGAGCAAATctgcataatatgcaaatctTACTCTTTGAAACTCACCCAACCAAATCATTagaaatttacataaaaatgtctCTATTATTTGCAAATCAAGGAgcaagtgcttggaccccgatgATCGCTGTTTGCagctatattttctatatttatgttGCTGTTCATCCCCGTTTAAAGCAAACCTATTGGTGTATGGATAGTACTGGCATTTTCAGCTCCGTAAAGTGTGTATCAGTCGGGCCCTAGTGTGTATCAAAGCAGGCAATGAGAAATAATATCTGGTGATGTGTACGAATATAACATTCTTCATCACAGTGGCTGGATTTTGCTCTAAATGTGCTGCACTGGGAAAACATGTAAACTTTATCACTCCACCTTAATCATTAAGAATTACACTCTTTGTTTTCCTGGATGAGGATAACATAAGATCAGCATTGAgttactgtcacacacacacacacacacacacacacacacacaacaaaacagcTGTTTGAATGGATTGTCACGTACACTGAGAAAAATCAGGGTTTACATTAGTTTGTTGATGGATAGCAGGGAAATCtagatgggtgtgtgtgtgcgcgtgtgtgttttaccCTGTAAAACCGTCCTATAAACCTCTCCGGTTCGTCGGacaaagaggagaggagaggagaaaacaGATGGGAACGGACTATCAGAAaccttcctcacacacactacaccatgACCAGGCATCGCATTATATGTGACTCACATTAGCCCCGCTCCAAACACGCCACGATACATCACGGTTCAATACCAAATAACGTTCATATCATTAGTTCGTACTAGGGAGCTGAGCCGGTTTTCTAGGGCACTAAATATCCTTATACACCAATAACTAGATCACTTATACAGGGAACTTGCACCCTACGTAACATATAGTTCACTATGCAGTAGCCTTTCTTCCTTAATGATGTAGGACTACGAAATGGCTCAATCCTAAATGGCTTCATATGCACTAAGTAGGGTGTACAATCCACTGTTTATATATTTGCTGGAGGGAGAACAAAAATATGAAAGTTCCCCTATTAGGTATTTTGTGCACTGCAAATGCTTGGCTTACTCCCATATTAACCCTTTAGTAAGGgcactatgtagggtgtagggtatagggtgtagatGTGATAAAGAATGAAATAGTATAGTAAGCAATATTCTATAGCCTATGTAGTACACTTAGATTAGTTCTAGATACACAGAGTGTAAATGCTATTACTTTAAACCCTATGTAGTGGACTCCTGATTGGTTAATGTCCAATATAAGGAGTAAAGAGCACGAATTCATTCCTGAAGTTCTCTACTGGACATTttagtgcactacttagggtcTAAGAGCCAATGTGCCATACATTCTTAATGCACTGATAAGGACTAAGGTGCTGAATCCCAATTCCTTATTGGACATACAGGGTGCGAAAGCTTACTTCAAAACCCTACGTcgtgcatacacacaaaatggGGGAGGCATTTGGGACGGAGCCTTTTTTCCCTGAATTATAGACGTTTAGAAAATTACAAACCAGTCCACACTGCAGCAACATGCAAATACAAGGCTGTGTGTTAGGCCAAATATTTCCAAAGCATAATAGTAAAAACTGgactttatatttgtaaatttgtaaagcTGTCTTGTGTGCTGTTAGTCACAGAAAACTTCTGAACTCATATCTGAGGAAATGCTTGAGAACGAACTCATCAATCTCAATCTGTTTCTTCTCCAAAATCCAGCTTTTGGTTTTCCTCATGCGAAAAGTATTTAAAGCCGTGCACCTTCCACTGTTTAATCTCGACGTTTGGGACGCAGCCAGAGATGAGCATCATTACATTCGCTTTCAGTTCTTTTCTGAACGgtttttaaaacatatacatacatctGACGACTATAAGTGCCTTTTTCCCCCCTTGATTTGGCTGGCTACATCAGGAGACACAGGTGAGTATCAGCGCCAGCTATGTGCTATGAGTCCATAAttataaaactaataaataaaagagaaaaataagaaatcaTTACTAAAATTATGtttcaaacaggaaaaaaaatgcaagaacCACAACCTTTAACAAGAGGCaaaatatagataaatatatgaacacataaaattaaatattgatacATGAGAAAATGTGGGTGGAACTCAACTGGATAAAAATgtgcacttacacacacacacacacacacacacacacacacacacacacacacacacagttcctcatACACAgtgaaaattgtaaaatgaCACATTTCCAGCACTGAAGATTAAGTTCATCCTGTTTCAGGCAGCTAAGAGTCAAGCACGCTCCTCCTTTACCCCTTCCTCCCTTCCTAGCTGTGCAGTACACACTTGGGTCCAGAAGGGGCTCCACTTCCTGctcagtcagagagagagagagagagagagggagagaccaGACAGACctctcagtctttctttcttcctggcCCATCACTTGTTCTTTTCAGGCGTTGATGACACGCCAGCTCAATCAGCTCGACCCCGCCCATCACCTTTTGCTGAACCAGGAAGAAGATCAGCACCACCAGGAAGTAGACGCGCAACGGCGTCCAGAGCCAGAGGCCGAGAAAGGAAAAGGCGATGAAGGCGTTCCAGTAGCACAGCGACGCGGCTTTGATCAGCGCCACCCTCAGCTCGCTCTTGCAGGGCGGTATGCGGGCTTCGGCTTCGTCGAAGCGCTGAGAGCTagaaaacgagAAAGCAGGTCCCGGAGGAGTGCAGCTGGGAAGAGAAGACCCGTGTTTTATTTCCCtccagcacagaatgaaaaaGTGCCCTCTGAAAGGCAGTCTGGGTAATATGCTAATTTAGGGCTGCATTACTTACTGCATTACTGGAGCCTTAACATCACAAAATAGTTCATATGCTTGGTGTAcagataaagagataaagaccacacacacgcagattTTCCAAATAGATGACCGCATACCAGGTGTGTCTAAAGGTGACATTATTAACCTCCAAAATCGATacttt

Function

symbol description
lclat1 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Acts upstream of or within endothelial cell development and hemangioblast cell differentiation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in hematopoietic stem cell. Orthologous to human LCLAT1 (lysocardiolipin acyltransferase 1).

NR:

description
PREDICTED: lysocardiolipin acyltransferase 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66090 True 3597 TUCP 0.41 3 31563555 31600685

Neighbor

gene id symbol gene type direction distance location
LOC113541870 LOC108263097 coding downstream 38655 31519040 ~ 31524900 (-)
si:ch1073-126c3.2 NA coding downstream 537710 31022661 ~ 31025845 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding downstream 557093 30920905 ~ 31006462 (-)
trnag-gcc_2 NA coding downstream 808079 30755406 ~ 30755476 (-)
LOC113541964 NA coding downstream 809877 30746232 ~ 30753678 (-)
slc30a10 LOC108263333 coding upstream 12917 31613602 ~ 31620331 (-)
gphb5 gphb5 coding upstream 395824 31996509 ~ 32006650 (-)
esr2b esr2 coding upstream 530762 32131447 ~ 32188847 (-)
jag2a LOC108263062 coding upstream 591165 32191850 ~ 32230995 (-)
dcdc2b dcdc2b coding upstream 714773 32315458 ~ 32331216 (-)
G55992 NA non-coding downstream 240091 31323154 ~ 31323464 (-)
trnag-gcc_4 NA non-coding downstream 703049 30860436 ~ 30860506 (-)
trnag-gcc_3 NA non-coding downstream 711548 30851937 ~ 30852007 (-)
G55449 NA non-coding downstream 940350 30619177 ~ 30623205 (-)
LOC113542125 NA non-coding downstream 945368 30504336 ~ 30618187 (-)
G56173 NA non-coding upstream 32410 31633095 ~ 31633326 (-)
LOC117596876 NA non-coding upstream 56366 31657051 ~ 31675951 (-)
G56279 NA non-coding upstream 128088 31728773 ~ 31730112 (-)
G56271 NA non-coding upstream 216568 31817253 ~ 31827134 (-)
G56315 NA non-coding upstream 244352 31845037 ~ 31846195 (-)
LOC113541990 NA other downstream 14922 31545901 ~ 31548633 (-)
rsrp1 rsrp1 other downstream 1219017 30340399 ~ 30344538 (-)
runx3 runx3 other downstream 1310099 30198325 ~ 30253456 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other downstream 1402331 30152908 ~ 30161224 (-)
G55209 LOC108263435 other downstream 1440733 30111831 ~ 30122822 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other upstream 77698 31678383 ~ 31830932 (-)
G56272 NA other upstream 227129 31827814 ~ 31829484 (-)
G56303 NA other upstream 236497 31837182 ~ 31838235 (-)
brf1a brf1 other upstream 638916 32239601 ~ 32289607 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other upstream 746070 32346755 ~ 32354500 (-)

Expression


Co-expression Network