G56271


Basic Information

Item Value
gene id G56271
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31817253 ~ 31827134 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU66256
acaaatgcaaaaaatgaatgAGGAGATCAGACATTTATTTGGCCTTACAATAAAACCATTAACGTTTAAAAtgttagcaaaaaaataaagacaaaaattatatacagatgaacaaacaaaaagaagcTGATAAAAGCAGTGGTTTTTTTTACACCCCTACGTCGaactccagagagagagacgacaCGTTTCAAAAGCTCATCAGAAAGCAGCCTACACCTAAACCACCCCTCCAAAGTCTCTGCACTAAATACTCGCATGTGTTTTCAGGGGTTAAAAAACAGAGGAATGGAGAGcttctaaaaacaaacacacactatttcAAGAGGCTTCACATTGTCCTTTAACCGTCAGTGACGATTCGTCAATTTGCTCGCCTGCCACTGCCATCCAAGACGGGAAAAACGTGGGCTATGAGACTGGTACGTATGATACACTTTCATCTACTGGAAAATATTCCGATCTGGTTTGAGAATCCGTTTCTCCTCCGCAGTCCCGATTCGTACGTCCACAGCAGAGAAGGAGCGAGTGAACGAGAGAAACTGTGAtgcttttctttatcttttttgtcGGCTCGTCTTTCTCTGTAGTGACACTGCTGTAACTTCAATGAAACTTCAATGACGTGGTTCAAGTCtcttatatatatttcatatatttcaatctttaaaaaaagaaaaaaagaaaagaaacaaaaaataaaaagaaaggaatgagGGGAAAATCAGTCCGGTCGCAGTAGGTTACTCCGAGGCTGGTGTGGGCTCAGCGGGCGTGGCCTCAGGCGTGGCCTCGGTCTCAGCGGGAGTGGAAGCAGGAGCTTCCTCGGATTTGGCGCTCTCCTCTGTGGGTGTGGCTTCTGCCACAGGGGCAGGCTCTTCTGCTTTAGGCTCCTCCTCTGCAGCCTCTGCAGCAGGTGCTGGTGCTGCCTCTGCCTCCACCTGTGCCTCTGCCTCAGCCTCAGCAGCTACCTCGTTGGTCTCGGCAGCCGGCTCCTCCTCTTTGGTTTCCTTGGGGGCGTGACCGTTCTCCTCTGGCGCTGCCGCCGCCGCCTCCGCTGGTTCCTCGGTgctcttcttgttcttcttcagcGACAGGCCTTTAAACTTGAACGAATTCTTCAAGGagaacttcttcttcttcttggtcTCCTTGGGTGCCTCGCTCTCTGCTGCCTTGGCGCTGGTTCCCTCGCCATCTGCAGCCTCGATGGCGTCCCCGGCCTCCGCCGTGTCTTTGACGGCCTCTGCGGTTCCGTTGCCGTCGGCCACCGCCGCCTCTCCCTCGGGTTTGGCCGACACGTCACCGTTGGTTTTGACATGGCCGTTCTCCTGGAGACGAAATTAGAGAAGAGACATTAGACGCTATTCAATATATTTCCAACCTTTTCCTGTGGTTTAAATTTTCGACAAAACGCTATTCTCAGAGCTCCAAGTACAGCTCGAGATCCACTACTACACCAATACTACCATCATCACAGTAACTGAGCGAGTGAGCATGTTTCTGTTGCCGTGTTGTGTACACCACAAACAAAATGTCACCACACCACCACATAATCAAGTGTAAGATCTGCGCTGTGTCAGTCTATACTGCACGCGTAAAACATGCATCAGTGGATGAGATTAGACAATACTCCAAATCTGATCCGACACAAATCCGTCATATCAAGCCGATACTGATGTTTCCTAGcagttaaaggaaaagaaaagataaatcTGTCATCGCTTGACAAAGGCGAGACGTGGGATTGGATCCAATTCAACATGCTagtaaactgaaaaaaaataaagaaatataatgaCGCTGACAAACAAAGTTGCACAAGATCACACGACTGGTGGGGAAAATGATCTGCTTGCTGTGTGAATATATTTGTGCACTCTCTctgtaaactgtgtgtgtggctgttatTAAATGAAACTGAGATAGGGTGATGAagtgcaaacacaaacatgttctGCACCTAAACATGTGCTTTGCCACTAACAAGTTaaccacacacacccccacccaaacacatacacaaacacacacagtagttttGTATAATCCTGTGCATGCGCAGTCCTGACACTAGGCGGCGCTGTTTCACCTGCTTTTCGCGTGTTTATCCGGGTTTGAGGTGCAATACTCGACTCTAACACTAGGCGCCGCTGTTGCTCCACTGAACTGCACTCAGACGTGAACGCGGAAAACGTGACAAAACAGCCGGGGCGCGTCCTAAACGGCTCATTAATGGCACCAAGTAGGACGGAGAATCCATTGTTTCatgcactatgtagtgcacgTTGAGAGGGAGCAGGGAGCCGTTTGAGCTTCAGACTTTTGGGGAGAAACCACGCGCGTCGTTTAATAGCGTGGATACCTTAATTCCAGTGACGTAGTCTAAttgtctgattaaaaaaaaaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtgtctctccatGTGTGTGACCCAGTTTCACCCCTCCTGTTTTTCCTCCTACCCGAGAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66256 True 2514 lncRNA 0.47 2 31817253 31827134

Neighbor

gene id symbol gene type direction distance location
slc30a10 LOC108263333 coding downstream 196922 31613602 ~ 31620331 (-)
LOC113541870 LOC108263097 coding downstream 292353 31519040 ~ 31524900 (-)
si:ch1073-126c3.2 NA coding downstream 791408 31022661 ~ 31025845 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding downstream 810791 30920905 ~ 31006462 (-)
trnag-gcc_2 NA coding downstream 1061777 30755406 ~ 30755476 (-)
gphb5 gphb5 coding upstream 169375 31996509 ~ 32006650 (-)
esr2b esr2 coding upstream 304313 32131447 ~ 32188847 (-)
jag2a LOC108263062 coding upstream 364716 32191850 ~ 32230995 (-)
dcdc2b dcdc2b coding upstream 488324 32315458 ~ 32331216 (-)
iqcc NA coding upstream 504259 32331393 ~ 32336477 (-)
G56279 NA non-coding downstream 87141 31728773 ~ 31730112 (-)
LOC117596876 NA non-coding downstream 141302 31657051 ~ 31675951 (-)
G56173 NA non-coding downstream 183927 31633095 ~ 31633326 (-)
G55992 NA non-coding downstream 493789 31323154 ~ 31323464 (-)
trnag-gcc_4 NA non-coding downstream 956747 30860436 ~ 30860506 (-)
G56315 NA non-coding upstream 17903 31845037 ~ 31846195 (-)
G56305 NA non-coding upstream 32673 31859807 ~ 31933590 (-)
G56614 NA non-coding upstream 243629 32070763 ~ 32072498 (-)
G56675 NA non-coding upstream 380355 32207489 ~ 32208007 (-)
G56693 NA non-coding upstream 416789 32243923 ~ 32244290 (-)
G56150 lclat1 other downstream 216568 31563555 ~ 31600685 (-)
LOC113541990 NA other downstream 268620 31545901 ~ 31548633 (-)
rsrp1 rsrp1 other downstream 1472715 30340399 ~ 30344538 (-)
runx3 runx3 other downstream 1563797 30198325 ~ 30253456 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other downstream 1656029 30152908 ~ 30161224 (-)
G56272 NA other upstream 680 31827814 ~ 31829484 (-)
G56303 NA other upstream 10048 31837182 ~ 31838235 (-)
brf1a brf1 other upstream 412467 32239601 ~ 32289607 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other upstream 519621 32346755 ~ 32354500 (-)
ndufaf1 ndufaf1,LOC107588570 other upstream 547202 32374336 ~ 32389144 (-)

Expression


Co-expression Network