G56272


Basic Information

Item Value
gene id G56272
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31827814 ~ 31829484 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU66257
agaaatgcattatattaacctgtgatttgcagctgcaccactgacagagctgctgttatggaaaattaatcaacacctgctgaccagtgagaattcagcagtgctgtagtgtaacGTGAATCTAATGCATTCCTCAGTCATGAAACTGTGGgaacaaatatgaaatatgttatGACTTGTCAATCCTGGCAGAAGGTTCTAGACTTCTCTGGATCGTTAATTTGGGACTCCTTACCTCTAGTGTTGCTTAAATTCCTAGAAACATCCTCCCCCAAATGATTCATTAAATTGGTGTATAAGATTTCTTTTTAAGTTTTGGATTTGAGGTTAGTTTTATTGACCATCTGTCTGCTTTCATCCTACACACCTGGCAACCCTAGACATCAGCGAGGCCAATCTCATATATAAATGCAAGCGAAAAGAGATTAATGAATATCAAGCctgttatttatctttatttttctcgCGTTTAAAACACCAGTTTTGGAAGTCCTTGTCATGTTTCAGGGACTTACCTTATTTCTGCTTACAGCCTCGTTTGTGTTCTTCAACTTGAAGTCTTCCTTAAGATTTCCATTCCAGCCACTATTTTCTGTCCGAGAATCTAGACTTCAGATTGTAAGAGACTGTAAATTATGCAACATTCTTTCATTAAGTTCCAGGTTTAGTTATGGAAGTTATGCTGTGTTTAACCGCCTTCAGTCTGTTCACTTTGCACTGCACAAAAGTCAATGCTCACCTTCGCTTGAGTgtataatctcacctggatactgtagatatgtacctgctgtaatcataaagaccgccctgtgctcatcccaggactttCATTCACAGTCTGCTCACACCGAACAACCTGTAAACACACTTACtactgttttcttcttcttgtcatcTCAGGAAGGTTTTCCTCGTCggtgttgcctctggcttgtttaGGGACagatccagatttctgtaaatctcCTTCACCACAGTACCTACTATTAAAAGTGGTATAAAGATAAAATTGTAATTGATCTCCGATTAGAAGTAGGTCCAGTATCTAATCAGGGCAGTACTATGCTAATTCATATTCTCCATTTTAGGATTTTATGATTAGAAACAAGACGGCTAGTTTGACCCTATGCACGAGGAAGTGACGAATTAACTGCCAAATCATGCACATAATAGAGGTGGGATTGTTGTAAACTGAAGCTTGTGTTGGTCGCTTTCCTTGTACGAATTAATCACAAGAAGggaaattaagtaaaaataaacctGCACTGGATACTGAAAATGTACCGAGGTACAAAATGACTGAAACCGACCCAGTAAACCTGCAGGTGAAGTCCTTTCTGTGTTTGAGCGGAATATGGACACATTATTGTACACCATTTTTTAGGGTCCCTGGTGGACTAAGAATCTGACGCTCTGACTGCTgcggcccgggtttgattcccgggcAGGGAGTGTACTCttagtgctggtcccaagcctggataagatgggagggttgcgtcaggcaGGGCACCctgcataaaacctgtgccagaTCACACATGCGGACcgatgatccgctgtggcgacccctaacaggagcagccaaaacaTCATTGTACaccatgtttactgtaatgctgctgttatagtaTGATTATGGCATACAGATGGCACTAAACGCAAGATCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66257 True 1671 TUCP 0.41 1 31827814 31829484

Neighbor

gene id symbol gene type direction distance location
slc30a10 LOC108263333 coding downstream 207483 31613602 ~ 31620331 (-)
LOC113541870 LOC108263097 coding downstream 302914 31519040 ~ 31524900 (-)
si:ch1073-126c3.2 NA coding downstream 801969 31022661 ~ 31025845 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding downstream 821352 30920905 ~ 31006462 (-)
trnag-gcc_2 NA coding downstream 1072338 30755406 ~ 30755476 (-)
gphb5 gphb5 coding upstream 167025 31996509 ~ 32006650 (-)
esr2b esr2 coding upstream 301963 32131447 ~ 32188847 (-)
jag2a LOC108263062 coding upstream 362366 32191850 ~ 32230995 (-)
dcdc2b dcdc2b coding upstream 485974 32315458 ~ 32331216 (-)
iqcc NA coding upstream 501909 32331393 ~ 32336477 (-)
G56271 NA non-coding downstream 680 31817253 ~ 31827134 (-)
G56279 NA non-coding downstream 97702 31728773 ~ 31730112 (-)
LOC117596876 NA non-coding downstream 151863 31657051 ~ 31675951 (-)
G56173 NA non-coding downstream 194488 31633095 ~ 31633326 (-)
G55992 NA non-coding downstream 504350 31323154 ~ 31323464 (-)
G56315 NA non-coding upstream 15553 31845037 ~ 31846195 (-)
G56305 NA non-coding upstream 30323 31859807 ~ 31933590 (-)
G56614 NA non-coding upstream 241279 32070763 ~ 32072498 (-)
G56675 NA non-coding upstream 378005 32207489 ~ 32208007 (-)
G56693 NA non-coding upstream 414439 32243923 ~ 32244290 (-)
G56150 lclat1 other downstream 227129 31563555 ~ 31600685 (-)
LOC113541990 NA other downstream 279181 31545901 ~ 31548633 (-)
rsrp1 rsrp1 other downstream 1483276 30340399 ~ 30344538 (-)
runx3 runx3 other downstream 1574358 30198325 ~ 30253456 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other downstream 1666590 30152908 ~ 30161224 (-)
G56303 NA other upstream 7698 31837182 ~ 31838235 (-)
brf1a brf1 other upstream 410117 32239601 ~ 32289607 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other upstream 517271 32346755 ~ 32354500 (-)
ndufaf1 ndufaf1,LOC107588570 other upstream 544852 32374336 ~ 32389144 (-)
slc66a3 pqlc3 other upstream 824352 32653836 ~ 32661612 (-)

Expression


Co-expression Network