G56305


Basic Information

Item Value
gene id G56305
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31859807 ~ 31933590 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU66293
tttttaaaataattaaacatttgtcATTTCTCCAACCCACTTTGACTTTCTGTCATCATTTATTTCAAGGctcaccacaaaaaaaaatgagtctGGTTGAATCGGAGACCTCCACAATCCCACAatcccctcccctctctctctctctctctctctctctctatcacactctctctccttatATATGCAACTAAAAAAGTTCAGAAGGCTGAAATTTGAAAATAAGGAGTAAAAATggagaaagggggaaaaaaaagaaagaaaattaaacagcGAGTGGTGTtcagtaatacatttttaacactCTGTGACCTTCcctaaagaaaaatatatatatttataaatgcgCTAAAGGTTCTAATAGATCAATCAACAACAGATCAATGAGCTGCATTCAGTTACAATATTTAACACTGTAagaaactctcacacacactcgtacacacaaACAATACGAGCTTCTCAGGTTTGGCGCAGGGACGCTGGGTCCTCGGTGTCTTCGCAGCAATggggtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtttactGGTACCAGTGCCAGACTGGTGCAGAATCAAGAGAGGAAGTCCAAAAAAACCAACCCAAGAGAGAATGAGTGGAAAGTCCTGGCAGCACCGAGAGAATAGAAAAGAAGTTTGTGTTAATGagattgtgattgtgtgtgtgtgtgtgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttgctgGTTAGCATTTTGCCTTTCCACTTTAAGGATTCTGCTATTAATAGAGTCTCAATAGATTCTATTAATAGATTATCAGCGACAAGATGAAAggatggaaaagagagagagagacagagagagagagagagagagtgtgaaggAGTGAGACGGTGTGTCTGGACGAGCGTTAGCAGGAACGGATCTTTCCTCAAACGACAGTGGTGAGGGTTCTGTTTCGTAGctgatttcattttctctccacAGTAGCAGTTCATTTCAAATCCTACTATCGGGTCAagtccatttctctctcccactcGGAAGAGCGAACTCTTTTTCTCCATTGTTTTAAAGTCcttgtttcattttcagtgtaatattcttgaagggaaaaaaatatagcaggaaaaaaatatttacagtgttgTTGAAATAATGAAAGAGACGACGGAAATCTACAGTAAAGTAAGTCGCACaatacagaaaggaaaaaaaataaggaaataaacataaacggaaaaaaagagaaggccTGTGTGGGCGTGGCCGGCGACGTGGGAGTGTGTTCCGGGGGTTGCACGAGAGGCGGGGCGGCGTTAAGTGGGAATAATGGCGTCACTCCGCAGGCCTCTCTTCAGCTCCAGGTCCTCCAGCTTCTTCCACAACTCCTCTCgctccttttccttcttcttctctctgtgtgaaTGAGGGATGAGAATGAGAGGTGAGTGACTGTTACAGCAGTGtgaagagagtgagtgagagaggcaAACTGATAGAGCGAAGGTGAAAGAGAGACCGAGAGcgaggaggaaggagagagagagagcgagcgagagaaaGATAGCGACTGAATGAAAGATAGAAAGGGGGACAGACTGAACGAGAGAGAAAGC
>TU66294
tttttaaaataattaaacatttgtcATTTCTCCAACCCACTTTGACTTTCTGTCATCATTTATTTCAAGGctcaccacaaaaaaaaatgagtctGGTTGAATCGGAGACCTCCACAATCCCACAatcccctcccctctctctctctctctctctctctctctatcacactctctctccttatATATGCAACTAAAAAAGTTCAGAAGGCTGAAATTTGAAAATAAGGAGTAAAAATggagaaagggggaaaaaaaagaaagaaaattaaacagcGAGTGGTGTtcagtaatacatttttaacactCTGTGACCTTCcctaaagaaaaatatatatatttataaatgcgCTAAAGGTTCTAATAGATCAATCAACAACAGATCAATGAGCTGCATTCAGTTACAATATTTAACACTGTAagaaactctcacacacactcgtacacacaaACAATACGAGCTTCTCAGGTTTGGCGCAGGGACGCTGGGTCCTCGGTGTCTTCGCAGCAATggggtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtttactGGTACCAGTGCCAGACTGGTGCAGAATCAAGAGAGGAAGTCCAAAAAAACCAACCCAAGAGAGAATGAGTGGAAAGTCCTGGCAGCACCGAGAGAATAGAAAAGAAGTTTGTGTTAATGagattgtgattgtgtgtgtgtgtgtgattgtgtgtgtgtgtgtgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagatcactGTATTACCTCTGGCGATCTGACTTGTAGGTGGCAGTGAGTTCATCAAACAAAGTGCTGTTCATTTCCATGAAGGCTTTCAGGACGTTGTACACTAAAGCTACGATCGCCCTGAACAcagcaaagaggaaaaaaaagcttatcACATAGCAGAAAGGGAACCTCAGATTGCAGGGAATATtttcacacgtgtgtgtgtgcgcgtgtgtgtgtgtttatgcactCACGGGTTCCAGTGCTCTTTGGAGATCCTGTACAAGCTGGCGAACATGATGGGCAGGATGACGCTGGAGTTCTCCTCAATAAGACTCATAATGTACTCATTATTCCAGTAGTACAGTGCTCGCTCagccacctacacacacacacacacacacacgcacacacacacgcacacacacgcacacacacgcacacacacgcacgcacacacacgcacacacgcacacacgcacaattTTCATTTCTAGTCAATcatttaagaaaagaaatattttggcAGCAAAGCAGGAAAACTGTTAatccagcactttttttttttttttttagaaagcatgTGGGTTGTTTGAGCACACAGAGATAAAGTGAGATTAGAGACAGGACATGCCCACAGGTGTTCAGCGTAGAGTGACGTGAGTGAAGTGAGATGAAAAATCACTGCTGGTGTGAGCGCTAAAGAAAACAGTGTACCTACCAAAGCAGAAAAAACTTCTATTCCTGTAACTGTTATTCTGAAAAGTGTAATTTTTCAGGCCCTTAAATGCCACAGCATCTAATTTTAGCGATGCACTGACCTGGAAGTGAGGGCTGGAGACGCATTTGGAGATCTGCTTGAACAGCGGCTCCTGGATCTTCACAAACTGCGTGGGCTCGATCACGTCCAGAATCTCCTCCAGCTCTCCGAGGAACATCACCTACAACCACGGAGACGCGTTAAAGCCCGAGACACGCACAGCTTCCTGTACGTTCATTCACTTTATTCTCTTCATCTTTAATAAACGCACCTCTTTTTGACTGCACGTCTTTGGCCAGAACTTGAGAAGTCCTCTAATGACCTGcacagaggaaagagaaatgCATCACCAAAAAGTACATTAGAAGTAAAACGTACccagatacaaacacacagaacagtgaAAGGTACAAACGGCACTCACTGGTTCTGTTAATGTGGGGTCTTTCTCTAGGAACTGTACAATACAATATGCCAACTGCAaaacagcagaaacacacaccgCAACTGACAATTAGACaatcaccacaaacacagaaTACAGCAAATTTCCTGGATTTGTTTCCACGGATTTCAGTTTccgctcaaaaaaaaaaaaaaaaaaaaaaacattcactaaTGCTGTTttccacaaataaaaaattaattaccaTTTTTGGAAATACCGAGATGAACCCTGCAtcccaaatactttttttttttttttttttttaaacacattaaaggCGCACTGATAAACATCTGGTGAAC
>TU66299
tttttaaaataattaaacatttgtcATTTCTCCAACCCACTTTGACTTTCTGTCATCATTTATTTCAAGGctcaccacaaaaaaaaatgagtctGGTTGAATCGGAGACCTCCACAATCCCACAatcccctcccctctctctctctctctctctctctctctatcacactctctctccttatATATGCAACTAAAAAAGTTCAGAAGGCTGAAATTTGAAAATAAGGAGTAAAAATggagaaagggggaaaaaaaagaaagaaaattaaacagcGAGTGGTGTtcagtaatacatttttaacactCTGTGACCTTCcctaaagaaaaatatatatatttataaatgcgCTAAAGGTTCTAATAGATCAATCAACAACAGATCAATGAGCTGCATTCAGTTACAATATTTAACACTGTAagaaactctcacacacactcgtacacacaaACAATACGAGCTTCTCAGGTTTGGCGCAGGGACGCTGGGTCCTCGGTGTCTTCGCAGCAATggggtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtttactGGTACCAGTGCCAGACTGGTGCAGAATCAAGAGAGGAAGTCCAAAAAAACCAACCCAAGAGAGAATGAGTGGAAAGTCCTGGCAGCACCGAGAGAATAGAAAAGAAGTTTGTGTTAATGagattgtgattgtgtgtgtgtgtgtgattgtgtgtgtgtgtgtgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
>TU66300
tttttaaaataattaaacatttgtcATTTCTCCAACCCACTTTGACTTTCTGTCATCATTTATTTCAAGGctcaccacaaaaaaaaatgagtctGGTTGAATCGGAGACCTCCACAATCCCACAatcccctcccctctctctctctctctctctctctctctatcacactctctctccttatATATGCAACTAAAAAAGTTCAGAAGGCTGAAATTTGAAAATAAGGAGTAAAAATggagaaagggggaaaaaaaagaaagaaaattaaacagcGAGTGGTGTtcagtaatacatttttaacactCTGTGACCTTCcctaaagaaaaatatatatatttataaatgcgCTAAAGGTTCTAATAGATCAATCAACAACAGATCAATGAGCTGCATTCAGTTACAATATTTAACACTGTAagaaactctcacacacactcgtacacacaaACAATACGAGCTTCTCAGGTTTGGCGCAGGGACGCTGGGTCCTCGGTGTCTTCGCAGCAATggggtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66293 False 1634 lncRNA 0.43 2 31931936 31933590
TU66294 True 2257 lncRNA 0.42 3 31930010 31933590
TU66299 False 770 lncRNA 0.40 2 31859807 31933590
TU66300 False 569 lncRNA 0.39 2 31887681 31933590

Neighbor

gene id symbol gene type direction distance location
slc30a10 LOC108263333 coding downstream 239476 31613602 ~ 31620331 (-)
LOC113541870 LOC108263097 coding downstream 334907 31519040 ~ 31524900 (-)
si:ch1073-126c3.2 NA coding downstream 833962 31022661 ~ 31025845 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding downstream 853345 30920905 ~ 31006462 (-)
trnag-gcc_2 NA coding downstream 1104331 30755406 ~ 30755476 (-)
gphb5 gphb5 coding upstream 62919 31996509 ~ 32006650 (-)
esr2b esr2 coding upstream 197857 32131447 ~ 32188847 (-)
jag2a LOC108263062 coding upstream 258260 32191850 ~ 32230995 (-)
dcdc2b dcdc2b coding upstream 381868 32315458 ~ 32331216 (-)
iqcc NA coding upstream 397803 32331393 ~ 32336477 (-)
G56315 NA non-coding downstream 13612 31845037 ~ 31846195 (-)
G56271 NA non-coding downstream 32673 31817253 ~ 31827134 (-)
G56279 NA non-coding downstream 129695 31728773 ~ 31730112 (-)
LOC117596876 NA non-coding downstream 183856 31657051 ~ 31675951 (-)
G56173 NA non-coding downstream 226481 31633095 ~ 31633326 (-)
G56614 NA non-coding upstream 137173 32070763 ~ 32072498 (-)
G56675 NA non-coding upstream 273899 32207489 ~ 32208007 (-)
G56693 NA non-coding upstream 310333 32243923 ~ 32244290 (-)
G56670 NA non-coding upstream 366716 32300306 ~ 32309955 (-)
G56661 oip5 non-coding upstream 447537 32381127 ~ 32381831 (-)
G56303 NA other downstream 21572 31837182 ~ 31838235 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other downstream 28875 31678383 ~ 31830932 (-)
G56272 NA other downstream 30323 31827814 ~ 31829484 (-)
G56150 lclat1 other downstream 259122 31563555 ~ 31600685 (-)
LOC113541990 NA other downstream 311174 31545901 ~ 31548633 (-)
brf1a brf1 other upstream 306011 32239601 ~ 32289607 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other upstream 413165 32346755 ~ 32354500 (-)
ndufaf1 ndufaf1,LOC107588570 other upstream 440746 32374336 ~ 32389144 (-)
slc66a3 pqlc3 other upstream 720246 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 782237 32715827 ~ 32728741 (-)

Expression


Co-expression Network