G56614


Basic Information

Item Value
gene id G56614
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32070763 ~ 32072498 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU66675
aaatcagacAAAATTGTTCACAGAGGTGGAAGACgggatgaagaaagagagagcatgCGCAGTGTTAAGAGTTACATCGGTGCATTTACATGGAAACATGACGAGAATAAAAAgcataaattataataataataaaaaaaacaaaaaaaacaaaacaaaaaagcactttATTCTCCTGATTGCATTTCAAAACTCCGATTTCAGAAAAATGAGAATGTGTAAATGTACACTACGCACGTTGAAGTAGTTCGTTATGTAAACACGttctaggaaaaaaatcaatcgTCATAATTTTCATCAGCATCAGGCAACGTGAGTAAATCTTTAACTCGAGCTTACAGAAATTCTCATTCATTAAGGCACCTCGTAATACACACTGTTGTATTATACTTCATATAATACAATCTGTAGCTCATGGTCTTAGTAAGTCTTAGGTGAAACACATGCTATAAAATGGATTTAGGAGAGCACTGACATTTTGTCTTTAGCAAACTGAAGACAATGCTCAAAGTAGCATGCAATTATTAGCTATATAAAGTGCTTAGGAAACTAAACATTATCCAAAATTTTCAAGAGGCACTGATATTTCCAAAATTCGTTTGAATGTTTTCTCAGGTACAGTATAACTTAGgaagtttaatattaattagacatttaaaatgtcaaaagtcAGTCCTTTGGATACTGTGCatactattaaaaaaacttAGCAGatcaaaattttattaaaaaccctattttggaaattaaatatttttataccacagcactggtgATTgctctgttctgattggtcataaagtgtcgattaattttctattacagcagcactgacaatGACAGGGTTTGTATTAATCCGCTTGtcctaatacgttattgtttatttagttttttatttagaaaggAATCTCCTGTGCCAGAGTTCTGCAACAGTCAGAGGGGAGCTGTATGTTTAAGTTTTCCATCAAATTCCATCATATTTCTCTGTAATACAGTAAAGTCTGCATTacagtctgcattttttttgtcatattactttcaagaaagggaaaaaaaagaaaggctggtgagagaacgactgtttattgctgctataatgttAGCTTGGtttacagatgttccacaatgtaattttaaatggataaaaatgtacaatgcGTCATtcgttaaattattatttttttttttaaatgcaatcaccggtaaattgctgtggcataagaggaataaaacactctgacaAAAAGATTATGAGAATGTCCAGGATGTAAACATGTCAGAAAGAAATCTTTGGCTCTGTTCATTTTTCATAAGCGTCATTAACAATcttgccaataaaaaaaatgccaaaggCTCCATGTAAATGCACTGCACTTAAAAGCCATAAGGGTCCTAATTCTAGAATGTTTCAGGTGTACAGGTTCTAGAAAGCGAGTCTAGTTCTAGAATGATTCAGATGTACAGGTTCTAGAAGGCGAGTCTATTTCTAGAAGACCGAGAAGTTCCGTAAAAAGGGAGCTCTAGCACTAGGAGACCACACACTTCTGCTGGCCTCTGGGAGGAGACTTGGAGAGTTCTCTAACGAATGGGGTTTTGGTTACCAGCTCTCTGGGGGGAGATTGCGTTCTCACAGCAGCCTCTGGTTTAGACGCAGCTTCAGGATCGCTCGGCTCCGAGGCGACGCACTCGCCT
>TU66676
aaatcagacAAAATTGTTCACAGAGGTGGAAGACgggatgaagaaagagagagcatgCGCAGTGTTAAGAGTTACATCGGTGCATTTACATGGAAACATGACGAGAATAAAAAgcataaattataataataataaaaaaaacaaaaaaaacaaaacaaaaaagcactttATTCTCCTGATTGCATTTCAAAACTCCGATTTCAGAAAAATGAGAATGTGTAAATGTACACTACGCACGTTGAAGTAGTTCGTTATGTAAACACGttctaggaaaaaaatcaatcgTCATAATTTTCATCAGCATCAGGCAACGTGAGTAAATCTTTAACTCGAGCTTACAGAAATTCTCATTCATTAAGGCACCTCGTAATACACACTGTTGTATTATACTTCATATAATACAATCTGTAGCTCATGGTCTTAGTAAGTCTTAGGTGAAACACATGCTATAAAATGGATTTAGGAGAGCACTGACATTTTGTCTTTAGCAAACTGAAGACAATGCTCAAAGTAGCATGCAATTATTAGCTATATAAAGTGCTTAGGAAACTAAACATTATCCAAAATTTTCAAGAGGCACTGATATTTCCAAAATTCGTTTGAATGTTTTCTCAGGTACAGTATAACTTAGgaagtttaatattaattagacatttaaaatgtcaaaagtcAGTCCTTTGGATACTGTGCatactattaaaaaaacttAGCAGatcaaaattttattaaaaaccctattttggaaattaaatatttttataccacagcactggtgATTgctctgttctgattggtcataaagtgtcgattaattttctattacagcagcactgacaatGACAGGGTTTGTATTAATCCGCTTGtcctaatacgttattgtttatttagttttttatttagaaaggAATCTCCTGTGCCAGAGTTCTGCAACAGTCAGAGGGGAGCTGTATGTTTAAGTTTTCCATCAAATTCCATCATATTTCTCTGTAATACAGTAAAGTCTGCATTacagtctgcattttttttgtcatattactttcaagaaagggaaaaaaaagaaaggctggtgagagaacgactgtttattgctgctataatgttAGCTTGGtttacagatgttccacaatgtaattttaaatggataaaaatgtacaatgcGTCATtcgttaaattattatttttttttttaaatgcaatcaccggtaaattgctgtggcataagaggaataaaacactctgacaAAAAGATTATGAGAATGTCCAGGATGTAAACATGTCAGAAAGAAATCTTTGGCTCTGTTCATTTTTCATAAGCGTCATTAACAATcttgccaataaaaaaaatgccaaaggCTCCATGTAAATGCACTGCACTTAAAAGCCATAAGGGTCCTAATTCTAGAATGTTTCAGGTGTACAGGTTCTAGAAAGCGAGTCTAGTTCTAGAATGATTCAGATGTACAGGTTCTAGAAGGCGAGTCTATTTCTAGAAGACCGAGAAGTTCCGTAAAAAGGGAGCTCTAGCACTAGGAGACCACACACTTCTGCTGGCCTCTGGGAGGAGACTTGGAGAGTTCTCTAACGAATGGGGTTTTGGTTACCAGCTCTCTGGGGGGAGATTGCGTTCTCACAGCAGCCTCTGGTTTAGACGCAGCTTCAGGATCGCTCGGCTCCGAGGCGACGCACTCGCCT

Function

GO: NA

KEGG:

id description
ko04371 Apelin signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU66675 True 1692 lncRNA 0.36 2 32070763 32072498
TU66676 False 1692 lncRNA 0.36 2 32070763 32072498

Neighbor

gene id symbol gene type direction distance location
gphb5 gphb5 coding downstream 64113 31996509 ~ 32006650 (-)
slc30a10 LOC108263333 coding downstream 450432 31613602 ~ 31620331 (-)
LOC113541870 LOC108263097 coding downstream 545863 31519040 ~ 31524900 (-)
si:ch1073-126c3.2 NA coding downstream 1044918 31022661 ~ 31025845 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding downstream 1064301 30920905 ~ 31006462 (-)
esr2b esr2 coding upstream 58949 32131447 ~ 32188847 (-)
jag2a LOC108263062 coding upstream 119352 32191850 ~ 32230995 (-)
dcdc2b dcdc2b coding upstream 242960 32315458 ~ 32331216 (-)
iqcc NA coding upstream 258895 32331393 ~ 32336477 (-)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding upstream 266736 32339234 ~ 32345727 (-)
G56305 NA non-coding downstream 137173 31859807 ~ 31933590 (-)
G56315 NA non-coding downstream 224568 31845037 ~ 31846195 (-)
G56271 NA non-coding downstream 243629 31817253 ~ 31827134 (-)
G56279 NA non-coding downstream 340651 31728773 ~ 31730112 (-)
LOC117596876 NA non-coding downstream 394812 31657051 ~ 31675951 (-)
G56675 NA non-coding upstream 134991 32207489 ~ 32208007 (-)
G56693 NA non-coding upstream 171425 32243923 ~ 32244290 (-)
G56670 NA non-coding upstream 227808 32300306 ~ 32309955 (-)
G56661 oip5 non-coding upstream 308629 32381127 ~ 32381831 (-)
G56668 NA non-coding upstream 327417 32399915 ~ 32400310 (-)
G56303 NA other downstream 232528 31837182 ~ 31838235 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other downstream 239831 31678383 ~ 31830932 (-)
G56272 NA other downstream 241279 31827814 ~ 31829484 (-)
G56150 lclat1 other downstream 470078 31563555 ~ 31600685 (-)
LOC113541990 NA other downstream 522130 31545901 ~ 31548633 (-)
brf1a brf1 other upstream 167103 32239601 ~ 32289607 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other upstream 274257 32346755 ~ 32354500 (-)
ndufaf1 ndufaf1,LOC107588570 other upstream 301838 32374336 ~ 32389144 (-)
slc66a3 pqlc3 other upstream 581338 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 643329 32715827 ~ 32728741 (-)

Expression


Co-expression Network