G56668


Basic Information

Item Value
gene id G56668
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32399915 ~ 32400310 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU66731
TCAGCTTGTAACacacgtgtttgtgtgtgtgtgtgtgtgtgtgtgttcttacctgatggcagaaatgtttttagttctctgtctgtctaatgCTTCAGCTCTCTCCTCCAGCTCGTTCAACTGATCCTGCAACATCTTCACCTTATCGCCGTCGCCGCTCTCCTCCGCCATCgcCTTTTCTTTGAGGAGTTGTGTTTTCTTCATGGCGTAGTTCGGCGGCGCCTTTCGGAATCGGTCCTTCTCTTTCACTA

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66731 True 251 lncRNA 0.49 2 32399915 32400310

Neighbor

gene id symbol gene type direction distance location
nusap1 nusap1 coding downstream 18878 32375964 ~ 32381037 (-)
LOC117596868 NA coding downstream 32125 32366310 ~ 32367790 (-)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding downstream 54188 32339234 ~ 32345727 (-)
iqcc NA coding downstream 63438 32331393 ~ 32336477 (-)
dcdc2b dcdc2b coding downstream 68699 32315458 ~ 32331216 (-)
si:ch211-10a23.2 NA coding upstream 77991 32478301 ~ 32483014 (-)
rdh12 rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107705384,LOC107588583 coding upstream 109214 32509524 ~ 32516634 (-)
arg2 arg2 coding upstream 125094 32525404 ~ 32535619 (-)
sobpa sobp,LOC107706905,LOC107588585 coding upstream 269196 32669506 ~ 32710211 (-)
mtres1 c3h6orf203 coding upstream 359361 32759671 ~ 32764344 (-)
G56661 oip5 non-coding downstream 18084 32381127 ~ 32381831 (-)
G56670 NA non-coding downstream 89960 32300306 ~ 32309955 (-)
G56693 NA non-coding downstream 155625 32243923 ~ 32244290 (-)
G56675 NA non-coding downstream 191908 32207489 ~ 32208007 (-)
G56614 NA non-coding downstream 327417 32070763 ~ 32072498 (-)
G56672 NA non-coding upstream 14599 32414909 ~ 32415460 (-)
G56827 NA non-coding upstream 244382 32644692 ~ 32647936 (-)
G56834 NA non-coding upstream 263571 32663881 ~ 32664343 (-)
G56860 NA non-coding upstream 313419 32713729 ~ 32713933 (-)
G57126 NA non-coding upstream 329574 32729884 ~ 32775597 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 10771 32374336 ~ 32389144 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 45415 32346755 ~ 32354500 (-)
brf1a brf1 other downstream 110308 32239601 ~ 32289607 (-)
G56303 NA other downstream 561680 31837182 ~ 31838235 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other downstream 568983 31678383 ~ 31830932 (-)
slc66a3 pqlc3 other upstream 253526 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 315517 32715827 ~ 32728741 (-)
G57210 NA other upstream 618968 33019278 ~ 33099572 (-)
slc38a6 slc38a6 other upstream 937093 33337403 ~ 33344836 (-)
lrrc9 LOC108262921 other upstream 1023354 33423664 ~ 33442815 (-)

Expression


Co-expression Network