G56670


Basic Information

Item Value
gene id G56670
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32300306 ~ 32309955 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU66733
CTTACACCAGgtttcatacatttattcagAAAAGGTATTACAAAGtgttattataaaacatatctTTAAAACCTGTAAAGTTCTACAAAACATCTCGGCTGTACAATCATCAACACATGCCTGTTTTTCTCATTGTGTTATTAACTAATCCGAACAGGTTTCGTTACAGTATAATAActacttttataccacagcgctgttggattctggattctgattggtcaagaagtggtggttaattttctataacagcagctctgacagtaacgTAGCTGCAAATcatagctttatattaatgcgcttatcgtttctatagtaacagctcattcacggtggataaaaaatgtgtgtCATCGTCAACAGGGTGAAGTTTCCtttaaggagacgtttatttagcatttatggaaggagtctccagtgtcagaggtaaagccgtaactttcacttttccgacatcttcaggacaggtGAGTTTACGCTTTgatgaggaaacgactgtttatagctgccataatgtaagtgagaaatggaactaacttgtttcataacatgaaatgtaaccataaacggATAATAAGtaagatgtgtcattctttcgtaaataaaaattgttagcactgataaatcgctgtggtataagaggagtaaaacctGAGGAACTtgcagttataggaaactaatcgaCTTCAGAGTGATATCCgataactccgcttcatcacaccacgccgtcgttgattattttcctataacagcaccacacacagtgagtgtgtgcttGAAATGTGTTGTATATGTTGGTTATTCAATGAGAAACGCAGCgttaaacagatttaaacaaTTTAAGGTATAAACAAAGAGCTCAGCTGCtccatatcacacacacacacacacacacacacacacatttttttatgtaacacCCCAacgagtgaaaaagaaaaagctagTTTCATGTAACGGAAGAGTGGATCAGTTGTTCGTTGGGAACTTTTGAGCTGAGCCCAAGGACAGTAAGAGGGGATGGTCTGAAATGATAAAtcctgagccaaaaaaaaaacaaaaaacaaacccaaaccaTTCAAGTCCACTCACAGCAATGATGTTTGTCACCTTGTTCATAGCAGGTATGACTtgttctggtgttttttttttttttcctcagggtTTGAAAATGATCTCATGTCACACAATAGGATGTCTGtctgaagacacacacaaaaaagactGATTTATGATTAACAAGTGTTTCATGTTCCGTGGCTTATTGATTGTCTTTTCCTCATTGGAAGATACATCGCTGTTCCTCGCTACAGCACAAACAAAGAGGTTCTTTTTCCAGCAAGTCATAGCGTGAGGACAAAGACGTAGAGAAACATTCCTTCATTTCTGTCTCAGTACATTACCTGTCTTCTTAAATTACTCCAGAACGTATCATCTTACCCAACAAAATTCTGgtgtgaataatattttttaaaaatgactccCAAGAAGCTACTGAAAATGTTACAgctgcaaagtgctgacactggacactccttccataaatgctaaataaatgtctccttacggAAAATTTCGCCAAACCAACGgctacacattttttaaattaagttaaCCCTAACGTTATCTAATCGAACACTCCTCTCACACGCCTTCTTTGTGTTCCCGGTTTCTGTTTTTACTCTTCACAAAACATCCATTCACTTTAATGAATGATAGCATAAATTCCTTTCAGCTTCTTTCATCGTTCATCAGTGTTTCTTTTAGAGTGATTCAAAGACTCTTTGGAGATAAAAGGAGGGGTTGGAATACATCACCTTGTTTAACCTTGCTCTCGTGCGCTCCCATATTTCTGCCATTTTAGGTAGTGCAAAAGAAAAGAACGACAACAATGATTTTTCTcattcttgaagttaatgagatttttttttttaaatgcagcgtgttattttaattacaaaatgcaaaactacTTTGCATTCCTCGCAATAGCGTATAGCACAAGGTATTTAGTTACACTGGTCCTGTGCAAGGCATCATGGGATTCAGGAATATATAAGCATCTGCGTAAGACGTTTTAATTTTTACCCAACACACGTAGCTCACGGTGAAACGCGATCTGATGACACATCCACCTCTCTGTACCCTCACAATCCCCAATTAGGCCTGGCTAAAAGGCTCTTTTTCCCTGCTTACAGTGCCGTTGGCTGACGGTTTCGATTGACGGGAAGCTCTTCTCTGCATCTTTATCAGCAGAACAATCAGACCGATTATGAAAAGAAACAGGAggacacacagcacacacaggaCGCTGACGGCTCTAGTGTTCGCTCCACAGCTGTGATTCTCTCCCATATGTGATGCTGACAGGTCTGAGCAGATCCTGATTGAGGAGCTGGTTCTTAAGTGTGAAGGCGACGTTCAGGGAAGAACTCGGTGACACGTAGCTGCTCTTTAGGTAATACAGTCCCATGGGTCCATCTGCTCCAGCTGCGTCCTCCCTGAACTCTGTGTGGTCACTGAGGACCTCGCCATGTTCTCCAAACCACCTGACCTCCGGCTTTGGGAAACCCTCGGCCTCGTAAAGCAGCGTGACGCTAGAGCAGCTCACGTTTACGCTCAGCCTCGGTTCTGTGTAGAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66733 True 2643 lncRNA 0.40 2 32300306 32309955

Neighbor

gene id symbol gene type direction distance location
jag2a LOC108263062 coding downstream 69311 32191850 ~ 32230995 (-)
esr2b esr2 coding downstream 111459 32131447 ~ 32188847 (-)
gphb5 gphb5 coding downstream 293656 31996509 ~ 32006650 (-)
slc30a10 LOC108263333 coding downstream 679975 31613602 ~ 31620331 (-)
LOC113541870 LOC108263097 coding downstream 775406 31519040 ~ 31524900 (-)
dcdc2b dcdc2b coding upstream 5503 32315458 ~ 32331216 (-)
iqcc NA coding upstream 21438 32331393 ~ 32336477 (-)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding upstream 29279 32339234 ~ 32345727 (-)
LOC117596868 NA coding upstream 56355 32366310 ~ 32367790 (-)
nusap1 nusap1 coding upstream 66009 32375964 ~ 32381037 (-)
G56693 NA non-coding downstream 56016 32243923 ~ 32244290 (-)
G56675 NA non-coding downstream 92299 32207489 ~ 32208007 (-)
G56614 NA non-coding downstream 227808 32070763 ~ 32072498 (-)
G56305 NA non-coding downstream 366716 31859807 ~ 31933590 (-)
G56315 NA non-coding downstream 454111 31845037 ~ 31846195 (-)
G56661 oip5 non-coding upstream 71172 32381127 ~ 32381831 (-)
G56668 NA non-coding upstream 89960 32399915 ~ 32400310 (-)
G56672 NA non-coding upstream 104954 32414909 ~ 32415460 (-)
G56827 NA non-coding upstream 334737 32644692 ~ 32647936 (-)
G56834 NA non-coding upstream 353926 32663881 ~ 32664343 (-)
brf1a brf1 other downstream 10699 32239601 ~ 32289607 (-)
G56303 NA other downstream 462071 31837182 ~ 31838235 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other downstream 469374 31678383 ~ 31830932 (-)
G56272 NA other downstream 470822 31827814 ~ 31829484 (-)
G56150 lclat1 other downstream 699621 31563555 ~ 31600685 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other upstream 36800 32346755 ~ 32354500 (-)
ndufaf1 ndufaf1,LOC107588570 other upstream 64381 32374336 ~ 32389144 (-)
slc66a3 pqlc3 other upstream 343881 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 405872 32715827 ~ 32728741 (-)
G57210 NA other upstream 709323 33019278 ~ 33099572 (-)

Expression


Co-expression Network