Gene
RNA
| Item | Value |
|---|---|
| gene id | G56672 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 32414909 ~ 32415460 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | description |
|---|---|
| ko00100 | Steroid biosynthesis |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU66735 | True | 532 | lncRNA | 0.53 | 2 | 32414909 | 32415460 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nusap1 | nusap1 | coding | downstream | 33872 | 32375964 ~ 32381037 (-) |
| LOC117596868 | NA | coding | downstream | 47119 | 32366310 ~ 32367790 (-) |
| ccdc28b | ccdc28b,LOC107585497,LOC107675524,LOC107705395 | coding | downstream | 69182 | 32339234 ~ 32345727 (-) |
| iqcc | NA | coding | downstream | 78432 | 32331393 ~ 32336477 (-) |
| dcdc2b | dcdc2b | coding | downstream | 83693 | 32315458 ~ 32331216 (-) |
| si:ch211-10a23.2 | NA | coding | upstream | 62841 | 32478301 ~ 32483014 (-) |
| rdh12 | rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107705384,LOC107588583 | coding | upstream | 94064 | 32509524 ~ 32516634 (-) |
| arg2 | arg2 | coding | upstream | 109944 | 32525404 ~ 32535619 (-) |
| sobpa | sobp,LOC107706905,LOC107588585 | coding | upstream | 254046 | 32669506 ~ 32710211 (-) |
| mtres1 | c3h6orf203 | coding | upstream | 344211 | 32759671 ~ 32764344 (-) |
| G56668 | NA | non-coding | downstream | 14599 | 32399915 ~ 32400310 (-) |
| G56661 | oip5 | non-coding | downstream | 33078 | 32381127 ~ 32381831 (-) |
| G56670 | NA | non-coding | downstream | 104954 | 32300306 ~ 32309955 (-) |
| G56693 | NA | non-coding | downstream | 170619 | 32243923 ~ 32244290 (-) |
| G56675 | NA | non-coding | downstream | 206902 | 32207489 ~ 32208007 (-) |
| G56827 | NA | non-coding | upstream | 229232 | 32644692 ~ 32647936 (-) |
| G56834 | NA | non-coding | upstream | 248421 | 32663881 ~ 32664343 (-) |
| G56860 | NA | non-coding | upstream | 298269 | 32713729 ~ 32713933 (-) |
| G57126 | NA | non-coding | upstream | 314424 | 32729884 ~ 32775597 (-) |
| G57169 | NA | non-coding | upstream | 383651 | 32799111 ~ 32800472 (-) |
| ndufaf1 | ndufaf1,LOC107588570 | other | downstream | 25765 | 32374336 ~ 32389144 (-) |
| tmem39b | tmem39b,LOC107675583,LOC107705392 | other | downstream | 60409 | 32346755 ~ 32354500 (-) |
| brf1a | brf1 | other | downstream | 125302 | 32239601 ~ 32289607 (-) |
| G56303 | NA | other | downstream | 576674 | 31837182 ~ 31838235 (-) |
| G56272 | NA | other | downstream | 585425 | 31827814 ~ 31829484 (-) |
| slc66a3 | pqlc3 | other | upstream | 238376 | 32653836 ~ 32661612 (-) |
| G57124 | pdss2,LOC102782659 | other | upstream | 300367 | 32715827 ~ 32728741 (-) |
| G57210 | NA | other | upstream | 603818 | 33019278 ~ 33099572 (-) |
| slc38a6 | slc38a6 | other | upstream | 921943 | 33337403 ~ 33344836 (-) |
| lrrc9 | LOC108262921 | other | upstream | 1008204 | 33423664 ~ 33442815 (-) |
