tmem39b (tmem39b,LOC107675583,LOC107705392)


Basic Information

Item Value
gene id tmem39b
gene name tmem39b,LOC107675583,LOC107705392
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32346755 ~ 32354500 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU66783
CCGCGTTCAGCCTCAACAtgaacatcaacatcaacatgaaCGTGTTCAGCACCAAAGATCCGCTCAGCGAGTTGAATTAACAGAACAGCAGCGGAGAAAACCATATCAAGGAATAAAGTCTGATCTTTCGCTCACACctgagaaagatagacagagagagagagagagagagaaggttgTGTGGAATggcaggaggaagaagaggagcgAGTCGGACGACGTACTGTCGTTCTCCGCTGGGCAATGAGACAGGATCCGTCAACAACGGCAACCACTCGACCAGCTCACCTGTGACAGGTGTGAGGTCACGGACGAGGAACAGTTCAGGAACGGGGATCCCCAGCCCCCCTCTCGCTACACAGACTGTGGTCCCGCTGAAGCACTGCAAGATCCCCGAGCTCTCTGTGGACCGCAACGTGATGTTCGAGCTGCACCTCCTCTTCTGCCACCTCATCGCACTCTTCGTGCACTATGTCAACATCTACAAGACGGTGTGGTGGTACCCGCCCTCACACCcaccctcacacacatcactggtGAGTCTCTCGACCCTCAGTGAAAGGAGCGTGGTAAGTCACACTGAaggagaaggaggcgtggcctctgtgtttgcaagagacagtggaggaggaggcgtggcctctgtgcttgcaagagacagtggaggaggaggaggcgtggcctctgtgtttgtcagtctgAATGaaggaggaggcgtggc
>XM_026939505.2
CACGCGCTTTCCGCGTCCCCGCGTTCAGCCTCAACAtgaacatcaacatcaacatgaaCGTGTTCAGCACCAAAGATCCGCTCAGCGAGTTGAATTAACAGAACAGCAGCGGAGAAAACCATATCAAGGAATAAAGTCTGATCTTTCGCTCACACctgagaaagatagacagagagagagagagagagagaaggttgTGTGGAATggcaggaggaagaagaggagcgAGTCGGACGACGTACTGTCGTTCTCCGCTGGGCAATGAGACAGGATCCGTCAACAACGGCAACCACTCGACCAGCTCACCTGTGACAGGTGTGAGGTCACGGACGAGGAACAGTTCAGGAACGGGGATCCCCAGCCCCCCTCTCGCTACACAGACTGTGGTCCCGCTGAAGCACTGCAAGATCCCCGAGCTCTCTGTGGACCGCAACGTGATGTTCGAGCTGCACCTCCTCTTCTGCCACCTCATCGCACTCTTCGTGCACTATGTCAACATCTACAAGACGGTGTGGTGGTACCCGCCCTCACACCcaccctcacacacatcactgAACTTCCACCTGATTGACTATAACATGCTGGTGTTCACCGTCATCGTGTTGTCACGCCGGCTCATCGCAGCCATCGTTAAAGAGGCGTCTCAGAGTGGGAAGTTTCCTCACTCCGTCTTCTTGGTGACGGCTCGTTTTGCTGTTTTGACGCTCACCGGCTGGAGTTTGTGCCGTTCACTTATCCACCTCTTCAGGACGTACTCTGTGCTCAGCCTCCTGTTCCTCTGCTATCCttTCGGGATGTATATCCCTATCCTCAGACCGAGCAGTGACGTGCGTCTCTCCCCCATTGCCTCCGTCGGCTCCAGAGACACGGGGACGGGAGTGGGCATGTCCATGGGGCGGGACTACCTGTCTGTACTGAAGGAGACGTGGAAGCAGCACACGAGCCAGCTGTACGGCGTCCAGCCCATGCCCACGCACGCCTGCTGCCTCTCACCTGACCTCATTCGCAAAGAGGTCGAGTTCCTCAAGATGGACTTCAACAAGAGGATGAAGGAGGTGCTGGTCAGCTCCATGCTCAGCGCGTACTACGTCGCCTTCGTGCCCGTCTGGTTCGTCAAGagcACTCAGTACGTGGATAAGCGCTGGTCGTGCGAGCTCTTCATCCTCGTGTTCGTGAGCACGTCGGTGATCCTGATGCGCCACCTGCTGCCCCCCCGCTACTGCGACCTGCTGCACAAAGCCGCCGCCCACCTGGGCTGCTGGCACAAAGTGGACCCCTCGCTGTGCTCCAACGTCCTGCAGCACACGTGGACAGAAGAGTTCATGTGGCCACAGGGGGTGTTGgtgaaacacaacaaaaacgtGTATAAGGCCATGGGCCATTATAACGTAGCAGTGCCTTCAGACGTCTCGCATTATCGCTTCTATtttttcttcaacagGCCTCTTCGAATATTAAACATCCTCATCATCCTGGAAGGAGCGATGATATTCTATCAGCTCTACTCGCTGATGTGTTCGGAAAAGTGGTACCAGACGATATCGTTAGCGCTGAtcctcttcagtaactactaCGCCTTCTTCAAGCTGCTCAGAGACAGAATCGTGTTGGGAAAAGCGTACTCATACTCCACCTCGTCAGACCACAAAGTCAGCTAGACGCTCCCTCCCTGTCACACCAGCGACGGAGAACAGAGCGGAAAAGCATGCAccagagctttttattttttctataactttttttttgtcactctGTTTATGTTCTGACCTGCCatggaataaaaaagaaaatatttttgtattccTTCA

Function

symbol description
tmem39b Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human TMEM39B (transmembrane protein 39B).

NR:

description
PREDICTED: transmembrane protein 39B

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66783 False 721 TUCP 0.55 4 32350801 32354482
XM_026939505.2 True 1808 mRNA 0.53 9 32346755 32354500

Neighbor

gene id symbol gene type direction distance location
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding downstream 1028 32339234 ~ 32345727 (-)
iqcc NA coding downstream 10278 32331393 ~ 32336477 (-)
dcdc2b dcdc2b coding downstream 15539 32315458 ~ 32331216 (-)
jag2a LOC108263062 coding downstream 115760 32191850 ~ 32230995 (-)
esr2b esr2 coding downstream 157908 32131447 ~ 32188847 (-)
LOC117596868 NA coding upstream 11810 32366310 ~ 32367790 (-)
nusap1 nusap1 coding upstream 21464 32375964 ~ 32381037 (-)
si:ch211-10a23.2 NA coding upstream 123801 32478301 ~ 32483014 (-)
rdh12 rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107705384,LOC107588583 coding upstream 155024 32509524 ~ 32516634 (-)
arg2 arg2 coding upstream 170904 32525404 ~ 32535619 (-)
G56670 NA non-coding downstream 36800 32300306 ~ 32309955 (-)
G56693 NA non-coding downstream 102465 32243923 ~ 32244290 (-)
G56675 NA non-coding downstream 138748 32207489 ~ 32208007 (-)
G56614 NA non-coding downstream 274257 32070763 ~ 32072498 (-)
G56305 NA non-coding downstream 413165 31859807 ~ 31933590 (-)
G56661 oip5 non-coding upstream 26627 32381127 ~ 32381831 (-)
G56668 NA non-coding upstream 45415 32399915 ~ 32400310 (-)
G56672 NA non-coding upstream 60409 32414909 ~ 32415460 (-)
G56827 NA non-coding upstream 290192 32644692 ~ 32647936 (-)
G56834 NA non-coding upstream 309381 32663881 ~ 32664343 (-)
brf1a brf1 other downstream 57148 32239601 ~ 32289607 (-)
G56303 NA other downstream 508520 31837182 ~ 31838235 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other downstream 515823 31678383 ~ 31830932 (-)
G56272 NA other downstream 517271 31827814 ~ 31829484 (-)
G56150 lclat1 other downstream 746070 31563555 ~ 31600685 (-)
ndufaf1 ndufaf1,LOC107588570 other upstream 19836 32374336 ~ 32389144 (-)
slc66a3 pqlc3 other upstream 299336 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 361327 32715827 ~ 32728741 (-)
G57210 NA other upstream 664778 33019278 ~ 33099572 (-)
slc38a6 slc38a6 other upstream 982903 33337403 ~ 33344836 (-)

Expression


Co-expression Network