G56827


Basic Information

Item Value
gene id G56827
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32644692 ~ 32647936 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU66925
CTTAACTACATTCACAGCTATATAgattacttttttattgtttacaaaaataagcaaatgttATACAGGTTCTTCAAACCACAGAGGCTACATACAGGTTTCGTTCTATTGTCAAACGATACAGCGTTTATAAAACATGCAGACCTGGACGCAGCGCTTTAACATGAAAAGTGCTCAGGCCAGTATAAATAAAGCACGTGACTCTAGGATGGCATGTCCGATAGACGGTGCAGATTTATAGATAATCGTGCCTTACCATTAGGAGCTCTGTAGAAAGTACAGTATGAGTAACACATTCACGGCACTCGCagcttcattcacacacacacacacacacacacacacacaaacacactcggCTGAACTCTATAGAAAAATACTCGGATCACTTCAAACCACAAAATAGTCAGAGGTGAACAGACATGGATGTGCGAtagatttcagaatttcttGTATGAAATTATGGGTTTAATTCTAATCCCAGATAAAGTAAGCACActtttagaataaaaataattttcctcCCAGGATAAAAATAAAGGTACTTCTTTTTCACGCAGATATGAAAACGGTCAACCATCTGGGCTTTACATTCACGGGGGAGTGCGTTAAGTGCTCGTGGGGGAGTTTCACTCACACAAACCTCTTCTCAGGGCAGAAAGGACTTGATTGGTTAAGTATGATGATCAAAATAACAGACAGGAGGCGGAGCTTGAGATCCTAGCTACAACAGGAACTCGTTCTTCGCACCTAGATTACTGAATCAGCTGGATTGTCGAATTGATATAATTCTGGATTTCTCCATTCATTgaagctgttattggaaaacgaCTCTGAGTTCAAACCTGCTCAGAAGCAAGATTACATAAACCAAGATTAGAACataattagaaatattaaatgtCTCGTAATGATTACAAAATTTGCTTAGTTATTGCGATTGCTCGAATGAATTAAATCTGTGAAGCAGCTTTTACAGCTAGTCTCCATTATTAACGTGTGTCTATGGATTGACATTTTTAACTAAAGCGTTAGCATGGGgatgtgatgtatattttctacatattcaaatgttttttttttggtctattCAAATTGAGATTGATCTATGCctacttataataataaaaaaaaaactgtggccAGAAATGTATTAAACTGCAAACTCGAAACAACAAATTGAGCACAAATTAGTCGAATTAGCTAGCTTGAAATGATCACAGTTAGCGATAAATCAAAACTAGCAAACCAAACAACCAAGTCATGTTTGTTATATAGCTAGCTATTATATAGCTATTATTATAGTTGGTTATAATTATCTAGTAATGCAGCTAGTTTTCTGACTCTCATAATAAGAGAAAATGTTATcataaattgctttttttttattattttttaaaacaaatcaaaaagaCAACATCTGggattttggacttttttttaacgCTTTGGAGAATCCGCTGTAGCTAGCAATGCGTCTTTTCGGACACTGTTGTCAGAATCCTGTTCAGCTTAACCAGTCATAACATTCTGCCCTAAGAACAGGTTTAGGTACTTAACCCTCCGTTAAGAGCGGGTGCGGTTTACACTGTAAGGCACGGTCATAGTgaaatacagagaaaccacaCTATTCGATTAGCATGAAACAGGCTGTGCCTTTCTACACAGGTgtatgttcatgtgtgtgtagggtggTTCTCTATCTGATAACGTAGTGTTAAAGTACCAACTACCACAGTCCTGGAAACAGTTATGGCGACCATGAAGCACGGACTGGACTCGTCCATCTTGGAATCTGATGTAAAAAGCTTGTCAGTAAAGCTTAATATAAAATGTGGATGAAATTAGGCATGTGCCGAACTGGTTATACGATACATCACGATATTGATCAATACTGTTATAAATATGGCATTCCATTTAAGAGAATCTGGGCAGAATTCACAAATGTTCAAGATATTACTTTGGCCAAAtctaagaaTGTAGCGATTGATAGTGAATTAACTGAAGTTTATAAGAGTGTAGTTATGAGTGTCTGCCAGGGTTCCTCGTCTGTCACAGCGTTGCCCCATGAGATGGTTACCTTTGAAAGTCCCCTAAAGCTCAGTAATTAAGTAATTCTCAGTAATTAAGGCTTCTTAACATGCTTTAAAGGTTCTGCTTGGAACCCCTTCTGATGGAGAAATACTTTTCCCAGAGGaacatccaaagaacccttaagagtcCTAAGGTTTCTTAGAGTGGATGCCAGGGTTCCTTAACTGTCACACTGTTGCCCCATGAGATGGTTACCATTGAAAATCCCCTAAAAGGTccttattttctgtatttaaagaTTCTCCACTTGCTAAAtaggttctacttggaatcccttctaacagtaaaatactgtttttccagagagacaaagaaagaacccttaagggttatAAGTTTTCAAGAGTGTAGCTATGAGTGCCTGCTGAGGTTCCTTGTCAGATAAAATGCTGCCCCAATAGACAGGTGCCTACGAAAGTCTTCTAAAGGTCCTTATTTTTAGACAATTAATGTTTCATTGCTTGCCAAAAAGGTTCTACTTGAAACCCCTTTAGAGAAAGACAACAAAATAACCCTTAAGGGTCCTACATTTGTGTAAGAGTGTAGCTATCTCAAGGCCTGTCATGGTTCTTTTTTTGTGATGGGTACCTTTGAAAAGCTACCAGATTATCAGTCCTTCTCTGATGCATTGTGATGATATCGTAAAACCGTGATAAAAGTTTGGGCAATTATCATGATGTAGTATCAGCACACACCTATCTCCAGGACGGggaattgcttttttttttccttcccaaGAACAACTTGACATCCCAGATTCCTCCACAATCTTGTAGTGTGTCCCTTTGGTGCTTCAGTCCATCTGAGTGCTTTGCATTCTggttttgtgaagaaaaaagttCTGGAGCTTAAGGTGAAGATCCAAGATTTGGAGAAACTCATCTTCTCACAGTTCTctctctggattttttttaaggtCCTGGAAAACCTCGGAGACGTCCCTACACGGCAACGCTCAAAACCGGTAACGTAACGTTTTCTTGCTAGTTTGGATTGATGAAACATTATAAAAACGTTAAGTTCTTGGTGTGAAAGCAGGAGAGCCCAACCTCAGCATGAAGTTACACCACATTCCCAAAGTGAGGTTAGCTAAAGAGAGGAAggggaggaaagaaagacaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66925 True 3217 lncRNA 0.38 2 32644692 32647936

Neighbor

gene id symbol gene type direction distance location
arg2 arg2 coding downstream 109073 32525404 ~ 32535619 (-)
rdh12 rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107705384,LOC107588583 coding downstream 128058 32509524 ~ 32516634 (-)
si:ch211-10a23.2 NA coding downstream 161678 32478301 ~ 32483014 (-)
nusap1 nusap1 coding downstream 263655 32375964 ~ 32381037 (-)
LOC117596868 NA coding downstream 276902 32366310 ~ 32367790 (-)
sobpa sobp,LOC107706905,LOC107588585 coding upstream 21570 32669506 ~ 32710211 (-)
mtres1 c3h6orf203 coding upstream 111735 32759671 ~ 32764344 (-)
rdh14a rdh14,LOC105895584,LOC104955673 coding upstream 217309 32865245 ~ 32868355 (-)
osr1 osr1,LOC108440809,LOC107548611,LOC107588719,LOC107668777,LOC107757107,LOC107675531 coding upstream 447720 33095656 ~ 33104243 (-)
LOC113542112 NA coding upstream 638865 33286801 ~ 33293343 (-)
G56672 NA non-coding downstream 229232 32414909 ~ 32415460 (-)
G56668 NA non-coding downstream 244382 32399915 ~ 32400310 (-)
G56661 oip5 non-coding downstream 262861 32381127 ~ 32381831 (-)
G56670 NA non-coding downstream 334737 32300306 ~ 32309955 (-)
G56693 NA non-coding downstream 400402 32243923 ~ 32244290 (-)
G56834 NA non-coding upstream 15945 32663881 ~ 32664343 (-)
G56860 NA non-coding upstream 65793 32713729 ~ 32713933 (-)
G57126 NA non-coding upstream 81948 32729884 ~ 32775597 (-)
G57169 NA non-coding upstream 151175 32799111 ~ 32800472 (-)
G57215 NA non-coding upstream 419598 33067534 ~ 33068685 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 255548 32374336 ~ 32389144 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 290192 32346755 ~ 32354500 (-)
brf1a brf1 other downstream 355085 32239601 ~ 32289607 (-)
G56303 NA other downstream 806457 31837182 ~ 31838235 (-)
G56272 NA other downstream 815208 31827814 ~ 31829484 (-)
slc66a3 pqlc3 other upstream 5900 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 67891 32715827 ~ 32728741 (-)
G57210 NA other upstream 371342 33019278 ~ 33099572 (-)
slc38a6 slc38a6 other upstream 689467 33337403 ~ 33344836 (-)
lrrc9 LOC108262921 other upstream 775728 33423664 ~ 33442815 (-)

Expression


Co-expression Network