G57124 (pdss2,LOC102782659)


Basic Information

Item Value
gene id G57124
gene name pdss2,LOC102782659
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32715827 ~ 32728741 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU67278
GTAAATCCCGCTGATCATGTCGGGCAGGAGAGCGTCAGATGCCGAGCCGCTCCGTCCTGCTGCTTTAGACATCAACAACACCACCAGACCACGCATCTGCAGATTGTGTTTACTGTCATACACAAacctcctggcgGTGTTGAGCAGCGGGTGTTTGGTCCCCACCAGTTTCCTGACGTGCATGGCGACGTTGCTGAGCTCGTCACTGAGCAGACAGCGTAGACTCATGAAGGACGTCGGATATCCCACGATCTTCTCCGCGTCTGACACGACTTTACTCCAGCTGGACGGAGACGGACCAGAGAACAGACTCAAGCTCCTCCATCCTCGCctcggagaacctggagaacccagagaacccagagaaccGAGGAGAGCGAGACGGAAACGCACGGC

Function

symbol description
pdss2 Predicted to enable prenyltransferase activity. Predicted to be involved in isoprenoid biosynthetic process and ubiquinone biosynthetic process. Predicted to be part of transferase complex. Human ortholog(s) of this gene implicated in primary coenzyme Q10 deficiency 3. Orthologous to human PDSS2 (decaprenyl diphosphate synthase subunit 2).

NR:

description
PREDICTED: decaprenyl-diphosphate synthase subunit 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67278 True 396 TUCP 0.57 2 32715827 32728741

Neighbor

gene id symbol gene type direction distance location
sobpa sobp,LOC107706905,LOC107588585 coding downstream 5616 32669506 ~ 32710211 (-)
arg2 arg2 coding downstream 180208 32525404 ~ 32535619 (-)
rdh12 rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107705384,LOC107588583 coding downstream 199193 32509524 ~ 32516634 (-)
si:ch211-10a23.2 NA coding downstream 232813 32478301 ~ 32483014 (-)
nusap1 nusap1 coding downstream 334790 32375964 ~ 32381037 (-)
mtres1 c3h6orf203 coding upstream 30930 32759671 ~ 32764344 (-)
rdh14a rdh14,LOC105895584,LOC104955673 coding upstream 136504 32865245 ~ 32868355 (-)
osr1 osr1,LOC108440809,LOC107548611,LOC107588719,LOC107668777,LOC107757107,LOC107675531 coding upstream 366915 33095656 ~ 33104243 (-)
LOC113542112 NA coding upstream 558060 33286801 ~ 33293343 (-)
hif1aa hif1a coding upstream 577571 33306312 ~ 33321663 (-)
G56860 NA non-coding downstream 1894 32713729 ~ 32713933 (-)
G56834 NA non-coding downstream 51484 32663881 ~ 32664343 (-)
G56827 NA non-coding downstream 67891 32644692 ~ 32647936 (-)
G56672 NA non-coding downstream 300367 32414909 ~ 32415460 (-)
G56668 NA non-coding downstream 315517 32399915 ~ 32400310 (-)
G57126 NA non-coding upstream 1143 32729884 ~ 32775597 (-)
G57169 NA non-coding upstream 70370 32799111 ~ 32800472 (-)
G57215 NA non-coding upstream 338793 33067534 ~ 33068685 (-)
G57267 NA non-coding upstream 505925 33234666 ~ 33235712 (-)
G57275 syt14 non-coding upstream 528488 33257229 ~ 33257792 (-)
slc66a3 pqlc3 other downstream 54215 32653836 ~ 32661612 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 326683 32374336 ~ 32389144 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 361327 32346755 ~ 32354500 (-)
brf1a brf1 other downstream 426220 32239601 ~ 32289607 (-)
G56303 NA other downstream 877592 31837182 ~ 31838235 (-)
G57210 NA other upstream 290537 33019278 ~ 33099572 (-)
slc38a6 slc38a6 other upstream 608662 33337403 ~ 33344836 (-)
lrrc9 LOC108262921 other upstream 694923 33423664 ~ 33442815 (-)
G57322 NA other upstream 726481 33455222 ~ 33462342 (-)
mycla LOC108263077 other upstream 751607 33480348 ~ 33524819 (-)

Expression


Co-expression Network