G57126


Basic Information

Item Value
gene id G57126
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32729884 ~ 32775597 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU67281
TTTTTATTATCTAATAAAAATCTGTACAAAGAATCGCAAACAGAGGAAACACCATACGTTAGATTTACAcacataaaacctttttttaccgtaaaacaaaataaaaacaaaccttcATAAGGTTCtgtaaatcttttatttttacaaaataaaaggaGAGAAGCATTAATGAGTCTTTAAGTTTTAATATGATGGACTTCAAGCTACTTTGAGTAAACAGTAATTGTACTTTAGTTAAGattaacacacttttttttaaagacaaatgcaAAGCAGCAGAGGAAAGAGGAACGGTTACGAGGCTCGGCTACGAGAGAGCGGCGAGTTGCTGCGTGTTAGCGAAGGACAACGtcgtcgtgtgtgtgtgtgtgtggattcagCGCAGCTGGAACTGATCGACTCTTCTCGAAAGATCGTCCAGTGTGAACAGTCAAGGAAAACacagatataaataaacataaaaccaAGTGCACAGACAttaaacacacacacacatacacacag

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG:

id description
ko00100 Steroid biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU67281 True 504 lncRNA 0.36 2 32729884 32775597

Neighbor

gene id symbol gene type direction distance location
sobpa sobp,LOC107706905,LOC107588585 coding downstream 19673 32669506 ~ 32710211 (-)
arg2 arg2 coding downstream 194265 32525404 ~ 32535619 (-)
rdh12 rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107705384,LOC107588583 coding downstream 213250 32509524 ~ 32516634 (-)
si:ch211-10a23.2 NA coding downstream 246870 32478301 ~ 32483014 (-)
nusap1 nusap1 coding downstream 348847 32375964 ~ 32381037 (-)
rdh14a rdh14,LOC105895584,LOC104955673 coding upstream 89648 32865245 ~ 32868355 (-)
osr1 osr1,LOC108440809,LOC107548611,LOC107588719,LOC107668777,LOC107757107,LOC107675531 coding upstream 320059 33095656 ~ 33104243 (-)
LOC113542112 NA coding upstream 511204 33286801 ~ 33293343 (-)
hif1aa hif1a coding upstream 530715 33306312 ~ 33321663 (-)
prkcha prkch,LOC107707065,LOC107675581,LOC107757130 coding upstream 553408 33329005 ~ 33336795 (-)
G56860 NA non-coding downstream 15951 32713729 ~ 32713933 (-)
G56834 NA non-coding downstream 65541 32663881 ~ 32664343 (-)
G56827 NA non-coding downstream 81948 32644692 ~ 32647936 (-)
G56672 NA non-coding downstream 314424 32414909 ~ 32415460 (-)
G56668 NA non-coding downstream 329574 32399915 ~ 32400310 (-)
G57169 NA non-coding upstream 23514 32799111 ~ 32800472 (-)
G57215 NA non-coding upstream 291937 33067534 ~ 33068685 (-)
G57267 NA non-coding upstream 459069 33234666 ~ 33235712 (-)
G57275 syt14 non-coding upstream 481632 33257229 ~ 33257792 (-)
G57290 NA non-coding upstream 521222 33296819 ~ 33298313 (-)
G57124 pdss2,LOC102782659 other downstream 1143 32715827 ~ 32728741 (-)
slc66a3 pqlc3 other downstream 68272 32653836 ~ 32661612 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 340740 32374336 ~ 32389144 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 375384 32346755 ~ 32354500 (-)
brf1a brf1 other downstream 440277 32239601 ~ 32289607 (-)
G57210 NA other upstream 243681 33019278 ~ 33099572 (-)
slc38a6 slc38a6 other upstream 561806 33337403 ~ 33344836 (-)
lrrc9 LOC108262921 other upstream 648067 33423664 ~ 33442815 (-)
G57322 NA other upstream 679625 33455222 ~ 33462342 (-)
mycla LOC108263077 other upstream 704751 33480348 ~ 33524819 (-)

Expression


Co-expression Network