slc38a6 (slc38a6)


Basic Information

Item Value
gene id slc38a6
gene name slc38a6
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33337403 ~ 33344836 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU67383
tcacatgaccagaaaTACGCAGGAATATGAGTGGAGCTGAAATAaggacttgtttttttttttttaccgggTGACAAACTTTACGTTTTATAaaaagtgaagttttttttaaacgatgAGCAGCTTGTAGAAACTAACTAGCGCTGAGAAAGTGTGgacagaggagacagacagacagaaagaaagaaagaaaagaaatagaagcgaaaatgaaaagagagagagagaacacatcGGTGCAGAGTGAAGGTGGATATCAGGCAGgtggagaggaagaagagacaACAACACTGCTGGGacaggatGTTCAGGTCCCCACAGGTTCCTCTTTCACCTTCTCTGTGTTTAATCTGATGAACGCTATCATGGGAAGCGGGATCCTGGGCTTAGCCTACGCCATGGCCAGCACGGGCGTCGTGGGCTTCAGTATTTTGTTGTTGCTGGTCTCCAGTTTGGCCGCCTACTCCATCCACCTCCTACTGACACTGTGTGACCAGACAGGCTTGAGCTCGTATGAAGGACTGGGAGAGAGAGCCTTCAGCAAAGCCGGGAAGGTGCTGGTGGCGTGTACCATCCTGATCCAGAATATTGGTGccatgGCTTCTTACATGTTCATCCTAAAGATGGAACTTCCTCCCACCATCAGCGGCTTCCTGAGAGCCGAGCATTCTGGtgtgtggtaTGAGAATGGTGTGGTGTTATTGATCCTggtcacagtgtgtgtggtg
>XM_034302705.1
CAGTCGACGCGTAAACATTCCgtttggtcacatgaccagaaaTACGCAGGAATATGAGTGGAGCTGAAATAaggacttgtttttttttttttaccgggTGACAAACTTTACGTTTTATAaaaagtgaagttttttttaaacgatgAGCAGCTTGTAGAAACTAACTAGCGCTGAGAAAGTGTGgacagaggagacagacagacagaaagaaagaaagaaaagaaatagaagcgaaaatgaaaagagagagagagaacacatcGGTGCAGAGTGAAGGTGGATATCAGGCAGgtggagaggaagaagagacaACAACACTGCTGGGacaggatGTTCAGGTCCCCACAGGTTCCTCTTTCACCTTCTCTGTGTTTAATCTGATGAACGCTATCATGGGAAGCGGGATCCTGGGCTTAGCCTACGCCATGGCCAGCACGGGCGTCGTGGGCTTCAGTATTTTGTTGTTGCTGGTCTCCAGTTTGGCCGCCTACTCCATCCACCTCCTACTGACACTGTGTGACCAGACAGGCTTGAGCTCGTATGAAGGACTGGGAGAGAGAGCCTTCAGCAAAGCCGGGAAGGTGCTGGTGGCGTGTACCATCCTGATCCAGAATATTGGTGccatgGCTTCTTACATGTTCATCCTAAAGATGGAACTTCCTCCCACCATCAGCGGCTTCCTGAGAGCCGAGCATTCTGGtgtgtggtaTGAGAATGGTGTGGTGTTATTGATCCTggtcacagtgtgtgtgGTGGTGGTGAAGAAATGGTCAGTTCCATGTCCACTGCCCAACAACTCCACTCTCACTctgAATTCTGTCTCAGACTGCAACTTGCTTTCGTCTTCATCTTCTCAGTGGGTGGGActtcacacacagtga

Function

symbol description
slc38a6 Predicted to enable L-glutamine transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport and glutamine transport. Predicted to act upstream of or within amino acid transport and sodium ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC38A6 (solute carrier family 38 member 6).

NR:

description
probable sodium-coupled neutral amino acid transporter 6

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67383 False 728 TUCP 0.48 7 33340222 33344809
XM_034302705.1 True 881 mRNA 0.48 9 33337403 33344836

Neighbor

gene id symbol gene type direction distance location
prkcha prkch,LOC107707065,LOC107675581,LOC107757130 coding downstream 608 33329005 ~ 33336795 (-)
hif1aa hif1a coding downstream 15740 33306312 ~ 33321663 (-)
LOC113542112 NA coding downstream 44060 33286801 ~ 33293343 (-)
osr1 osr1,LOC108440809,LOC107548611,LOC107588719,LOC107668777,LOC107757107,LOC107675531 coding downstream 233160 33095656 ~ 33104243 (-)
rdh14a rdh14,LOC105895584,LOC104955673 coding downstream 469048 32865245 ~ 32868355 (-)
dhrs7 dhrs7 coding upstream 12194 33357030 ~ 33361865 (-)
six1a six1,six1b,LOC108263091,LOC108414064,LOC108257556,LOC107697302,LOC107589069,LOC108434988 coding upstream 40278 33385114 ~ 33387819 (-)
six4a NA coding upstream 44657 33389493 ~ 33403724 (-)
tdrd9 tdrd9,LOC104966444 coding upstream 123187 33468023 ~ 33484082 (-)
kif15 kif15 coding upstream 140177 33485013 ~ 33505325 (-)
G57292 NA non-coding downstream 31885 33303570 ~ 33305518 (-)
G57290 NA non-coding downstream 39090 33296819 ~ 33298313 (-)
G57275 syt14 non-coding downstream 79611 33257229 ~ 33257792 (-)
G57267 NA non-coding downstream 101691 33234666 ~ 33235712 (-)
G57215 NA non-coding downstream 268718 33067534 ~ 33068685 (-)
G57300 NA non-coding upstream 18768 33363604 ~ 33364547 (-)
G57302 ppm1a,LOC106571506 non-coding upstream 20221 33365057 ~ 33410771 (-)
G57224 NA non-coding upstream 25024 33369860 ~ 33375501 (-)
G57232 NA non-coding upstream 25939 33370775 ~ 33406126 (-)
G57223 NA non-coding upstream 65712 33410548 ~ 33411453 (-)
G57210 NA other downstream 237831 33019278 ~ 33099572 (-)
G57124 pdss2,LOC102782659 other downstream 608662 32715827 ~ 32728741 (-)
slc66a3 pqlc3 other downstream 675791 32653836 ~ 32661612 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 948259 32374336 ~ 32389144 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 982903 32346755 ~ 32354500 (-)
lrrc9 LOC108262921 other upstream 78828 33423664 ~ 33442815 (-)
G57322 NA other upstream 110386 33455222 ~ 33462342 (-)
mycla LOC108263077 other upstream 135512 33480348 ~ 33524819 (-)
trnag-gcc_5 NA other upstream 185091 33529927 ~ 33529997 (-)
LOC113542143 LOC108263078 other upstream 217942 33562778 ~ 33570236 (-)

Expression


Co-expression Network