G57220


Basic Information

Item Value
gene id G57220
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33465699 ~ 33467307 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU67389
CACAGCtaataaaacaccacacacacacacacacacacacacacacgttttacattacagcacatttatttatttttgttcatcaATTAAATACATGAGTGCAAACAGTTACAGAGTCCACGCTGAGCTCAAACCAACGACACTGAACTGATCACGCTCCTGACTGTACAAAAGCAGAAGTACACTTAACACACTTTCAAATTGCTgtgttcaacacacacacacacacacacacacacacaggagaaaatcATTCacaatatattcatattaatgcgTGTGCGTctgtgggcatgtgtgtgtgtgtgtctgtgtctgtgtgtaagcaGTTATACGGCGACTGAGCAGGTATGGAGcgtgtgctcgtgtgtgtgtgtgctcgtgtgtgtgtgtgctcgtgtgtgtgtgctcgtgtgtgtgagagagatgttcTTAGAGTTAGATTGAAGCAATGCAGaatgaaaacacagaaaaaaactgatattttaaatattattcactAAAGACTGACTTTCATGCGTTTTAATCTGAAGCAAAATGAGAGATAGAGCGCGTTTCTCGGGTGTGTGAGATTTGACCATACAATAGTGAAGCTGTGATAAATTACATCGTATCGTTTCCCCATTTTCCTTAAGAAAgtatttactcatttaaagTAACTTAACCGTCTAACTGGCGCTCTGTTAGCAAAAGAAAATCTTGTCATGCGTGGGTATCGTGAACGTAAAAACTTCTTTTGGCAAGGTTTAATTTCATCCAGATTCGTTACCATGTGCTGTTTCAACTAATTCAACTAAGCTAATTTTTAACGtgacttgtttgtttgttttttttttaaggcatgtGTCGATAATCACCACGAACCGTATCACGATTATCCCTGACGCGTTGTTTGAGACGCCGCCAAGGTTCTCGAATCCAATCGGAACAGCTAGAGCTAatcatgtgatcatgttttGTTATCATAAACCCTGATACGGTGTCAGGTAATAATCGTGATTTGTTATCGGCACACGCCTGCTGACTCGGGCTCCTCTTTAATACGCCCTCGTTGACTCCCCCTTAGAAGTGCGCATGAAGTGCGTATCACACGGAGGAGTGTGCACTCTCAGCAGGAACGGCGTAGTGCAAATGATTTCCTCTCCGAGATCTACACACTACATGCGAACTCGCTAGTTTGTTCCATCAGATTAAAAACCCACCCAAACCTCAGTGCCTACGATTCATGgagcagtgcattctgggtaatttGTGCTCCTGAACGCTGCGGCCATGTCCATTTGATCACCGTGCCTTGGAAGTGGAAGTCAACGAGGGCGTGTTAAAAACAGGATTGGGACGCAGCATTGCTGCGATCGTTACTGGCTTTGCAGTGTTTAGTGGATTTGGATGGAGGGATTTTATTCATCCTTCCTCTTGGCTCCAGGAACCTTCTCTCTCAACCTgcgtaataaaaaaaaaaacaaaagttacacacacacacacacacacacacacacacacgtctcagcAGATGGACTACATCAGGCTCGAGTTTAGCGCTTCATAGTGTTTCTGTTTCTGCGGTTCAATTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67389 True 1577 lncRNA 0.43 2 33465699 33467307

Neighbor

gene id symbol gene type direction distance location
six4a NA coding downstream 61975 33389493 ~ 33403724 (-)
six1a six1,six1b,LOC108263091,LOC108414064,LOC108257556,LOC107697302,LOC107589069,LOC108434988 coding downstream 77880 33385114 ~ 33387819 (-)
dhrs7 dhrs7 coding downstream 103834 33357030 ~ 33361865 (-)
prkcha prkch,LOC107707065,LOC107675581,LOC107757130 coding downstream 128904 33329005 ~ 33336795 (-)
hif1aa hif1a coding downstream 144036 33306312 ~ 33321663 (-)
tdrd9 tdrd9,LOC104966444 coding upstream 716 33468023 ~ 33484082 (-)
kif15 kif15 coding upstream 17706 33485013 ~ 33505325 (-)
tacc3 tacc3,LOC108440911 coding upstream 39787 33507094 ~ 33516686 (-)
LOC113541868 NA coding upstream 120586 33587893 ~ 33592807 (-)
si:dkey-157l19.2 LOC108262993 coding upstream 143150 33610457 ~ 33644218 (-)
G57317 NA non-coding downstream 43225 33421824 ~ 33422474 (-)
G57223 NA non-coding downstream 54246 33410548 ~ 33411453 (-)
G57302 ppm1a,LOC106571506 non-coding downstream 54928 33365057 ~ 33410771 (-)
G57232 NA non-coding downstream 59573 33370775 ~ 33406126 (-)
G57224 NA non-coding downstream 90198 33369860 ~ 33375501 (-)
G57335 NA non-coding upstream 68171 33535478 ~ 33535975 (-)
G57354 NA non-coding upstream 104103 33571410 ~ 33572419 (-)
G57356 NA non-coding upstream 107979 33575286 ~ 33576847 (-)
G57368 NA non-coding upstream 189687 33656994 ~ 33660021 (-)
G57379 NA non-coding upstream 233913 33701220 ~ 33762528 (-)
G57322 NA other downstream 3357 33455222 ~ 33462342 (-)
lrrc9 LOC108262921 other downstream 22884 33423664 ~ 33442815 (-)
slc38a6 slc38a6 other downstream 120863 33337403 ~ 33344836 (-)
G57210 NA other downstream 366127 33019278 ~ 33099572 (-)
G57124 pdss2,LOC102782659 other downstream 736958 32715827 ~ 32728741 (-)
mycla LOC108263077 other upstream 13041 33480348 ~ 33524819 (-)
trnag-gcc_5 NA other upstream 62620 33529927 ~ 33529997 (-)
LOC113542143 LOC108263078 other upstream 95471 33562778 ~ 33570236 (-)

Expression


Co-expression Network