mycla (LOC108263077)


Basic Information

Item Value
gene id mycla
gene name LOC108263077
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33480348 ~ 33524819 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU67393
gagAGCTAAAgctaactaacacacactttatgCAAAGAAGTCGAGTCAAATTCagaactgacaaaaaaaaaggaaaagaccAGACTGGAAAATAGCTGAGATCAGCTTAAAGATCCGGAAACTCTCGCAATACGCTTTACACAAACTGACGGAGGAATAAAACCGACAAACTCCTGCAAGAACCAAAAATCTGTGAACTCTAACCTCGTCTAATTGGGTCTTATCTCCTTAAAATAATCCCTGAACTTCACCTGAGGTTGAGTTGAGTCAGAAATAAGATGTGTAGAATCCTGAGATGCTGTGCTTTCTCACTCTGAGCTGAAAGTGTATCGtgctgtgatgtgatggtgaGGATCGTCGTGTCGTCTGTGTTTACTCAGGACCGCAGCggggagagaaaagaaaacaaaacactgttgaacttgtgtgtgtgctgatgtctGAGTCCTCAGCTCCTCTGATCGGCCGTTCTGTACCTGAAGAATCAAATGTAGGAATTGTGAGATTGCTTAAAGTTCGGCCCATGCCTAGTCATGTTTGCaagggtgggtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagagatgaTTAAACTGGACCGGTAATCATGTGTTCGTATCTTTACACCAGGTGAACTTTGCACATTAGGAGCAGGaagtatttgtgtttttcttcttcataaGAATGAAATGTTCCATTATttcctcgtgtgtgtgagtgtgtgtgtgagtgtgtgtgtgagtgtgagtgtgtgtgagtgtgtgtgagtgtgt
>TU67394
gagAGCTAAAgctaactaacacacactttatgCAAAGAAGTCGAGTCAAATTCagaactgacaaaaaaaaaggaaaagaccAGACTGGAAAATAGCTGAGATCAGCTTAAAGATCCGGAAACTCTCGCAATACGCTTTACACAAACTGACGGAGGAATAAAACCGACAAACTCCTGCAAGAACCAAAAATCTGTGAACTCTAACCTCGTCTAATTGGGTCTTATCTCCTTAAAATAATCCCTGAACTTCACCTGAGGTTGAGTTGAGTCAGAAATAAGATGTGTAGAATCCTGAGATGCTGTGCTTTCTCACTCTGAGCTGAAAGTGTATCGtgctgtgatgtgatggtgaGGATCGTCGTGTCGTCTGTGTTTACTCAGGACCGCAGCggggagagaaaagaaaacaaaacactgttgaacttgtgtgtgtgctgatgtctGAGTCCTCAGCTCCTCTGATCGGCCGTTCTGTACCTGAAGAATCAAATGTAGGAATTGTGAGATTGCTTAAAGTTCGGCCCATGCCTAGTCATGTTTGCaagggtgggtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagagatgaTTAAACTGGACCGGTAATCATGTGTTCGTATCTTTACACCAGGTGAACTTTGCACATTAGGAGCAGGaagtatttgtgtttttcttcttcataaGAATGAAATGTTCCATTATttcctcgtgtgtgtgagtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgagtgtgagtaggGGGAAAGAGTGATGAACTACACAAGCTCTGCTCTCTGGTGATGCAGCGGTGTGTTTTAATGATGCACATCTTTCCATGTTGTCCTCAGttacctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacatgctGTTGTGATTGCTGTAGCATTTGCACATGCTCAAtagaggtttttgttttgttttgttttggacaCAACTCGAATCTGCACAATGGTGTTGTAAATACTTcgtcatttgtgtgtttttcacattcagattctattttgctaaaaaaaaattaaaataaaataaaaacaaatgcagatttaaaaaatgcatgaacTTTTGGTTCtggttatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>XM_034301506.1
TAAGGCTACACAAAGGCGCAGCTGTGGCGCGAAAGTGGCGCGCGGGCGCGGTTTGCTCAGTCTCGCGCTGCGTATTTGCAGTAGTTGTTTAATTAACAGACGCTAATTAAacgcttttcttcttctcttcttcctcctggTTTCTGATTAACTCTGGATTTCTGAAACGCAGACCCCGGCGTGTGGAGTGTTCCTGCTTCTTGGcgctggagattttttttttcccttcctttgTTCCGGAAGTTCAAttgttctctttctttgtccttcAGCCCCGGTTTCTTCTGCTGCTCTTCAGTCCGGACCTGAACAGATGAGACGGTTGTGActccggctgtgtgtgtgtgtgtgtgtggggattaGACATGGAGTGTGATCACCACCAGCACTACTTCTACGACGAGATGGACGGAAGGATCGAAGACTTCTTCACGTCCACGGCGCCCAGCGAGGACATCTGGAAGAAGTTTGAGCTTCTCCCCACGCCGCCCGTGTCTCCCTCCAGGACTTTCCACGCGGGACGTGCGTTATTCCCGCTGTCGGCGTCGGAGCGGAGCATGTGGGCGTCGGACGATTACGGCGTGCTTCCTCTGAAGAAGCTCGACCCGCTGGACGTGTTCGGGAACCTGAGCTCCGTGGTGATTAAGGACTGCATGTGGAGCGGCGGGTTTAACGCCACCAGAGCGACCCCTCGCTCAGAAACGCATCAGAGCGAACTCGCGCACGTGAACGCACCACGGATCCAGAGCGCAGTGAGACAGACCGACGTACAGGTCACGAGGTGTGTGAACCCCGCAGCCGTCCTCAACCTGCCCGTGTCCCAGTCCAAAAAAACCCCGGCGTCCTCAGGATCCGAGTCGCGCTCGGACTCGTCCGatgatgatgatgagatcgATGTTGTGACGGTGGAGAACCGTTTGAAGAAGCGCACTCGCACGCCCATCACCATCGCCGTGAGCGCCGACCCGCACGGCCCGCGCAAGAAGCACTTCCACATCTCTCTGCACCGGCAGCAGCACAACTACGCCGCTCCGTCTCCGGAATCCGACGACgagcaccaccaccaccaccatcaccctGACGACGATGACAACGATGAAGAAGAGCCGCTCGGTAAGCGAGTTCGGATTGACCCTTCGCTCTTATCTGCTCCGTCGTCTTCCTCCTCGTCCTCTCCGGCCAGCTCAGACTCCGAGGACTCCACCGAGCAGCGCAGGAACTTCctggagaggaagaggagggacGACCTGCGATCTCGCTTCCAGATGCTCCGGAACGAAATTCCAGGTCTGTCAGAGTCTGCTAAAACCTCCAAGGTGGCCATCCTGACCCACGCCACGGAGTACCTGCTGCAGCTCCGGGCGCGAGAGAGACGGCAAGCGCAGGAGAGGAAGAAACTCCGAGCCAGACGACAGCTACTGCTGCGCAAAATCAGCGCCCTGAAAAAGCCATGAACTCAATCCGACAGATATTTATTCTGAATCTAAAGGGTTAATCTAAAGGTGGtgcgtttttcttttttttccttttttttcctttttttttttttttaaagcacagagAGCTAAAgctaactaacacacactttatgCAAAGAAGTCGAGTCAAATTCagaactgacaaaaaaaaaggaaaagaccAGACTGGAAAATAGCTGAGATCAGCTTAAAGATCCGGAAACTCTCGCAATACGCTTTACACAAACTGACGGAGGAATAAAACCGACAAACTCCTGCAAGAACCAAAAATCTGTGAACTCTAACCTCGTCTAATTGGGTCTTATCTCCTTAAAATAATCCCTGAACTTCACCTGAGGTTGAGTTGAGTCAGAAATAAGATGTGTAGAATCCTGAGATGCTGTGCTTTCTCACTCTGAGCTGAAAGTGTATCGtgctgtgatgtgatggtgaGGATCGTCGTGTCGTCTGTGTTTACTCAGGACCGCAGCggggagagaaaagaaaacaaaacactgttgaacttgtgtgtgtgctgatgtctGAGTCCTCAGCTCCTCTGATCGGCCGTTCTGTACCTGAAGAATCAAATGTAGGAATTGTGAGATTGCTTAAAGTTCGGCCCATGCCTAGTCATGTTTGCaagggtgggtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagagatgaTTAAACTGGACCGGTAATCATGTGTTCGTATCTTTACACCAGGTGAACTTTGCACATTAGGAGCAGGaagtatttgtgtttttcttcttcataaGAATGAAATGTTCCATTATttcctcgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgagtgtgagtaggGGGAAAGAGTGATGAACTACACAAGCTCTGCTCTCTGGTGATGCAGCGGTGTGTTTTAATGATGCACATCTTTCCATGTTGTCCTCAGttacctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacatgctGTTGTGATTGCTGTAGCATTTGCACATGCTCAAtagaggtttttgttttgttttgttttggacaCAACTCGAATCTGCACAATGGTGTTGTAAATACTTcgtcatttgtgtgtttttcacattcagattctattttgctaaaaaaaaattaaaataaaataaaaacaaatgcagatttaaaaaatg
>XM_034301508.1
TAAGGCTACACAAAGGCGCAGCTGTGGCGCGAAAGTGGCGCGCGGGCGCGGTTTGCTCAGTCTCGCGCTGCGTATTTGCAGTAGTTGTTTAATTAACAGACGCTAATTAAacgcttttcttcttctcttcttcctcctggTTTCTGATTAACTCTGGATTTCTGAAACGCAGACCCCGGCGTGTGGAGTGTTCCTGCTTCTTGGcgctggagattttttttttcccttcctttgTTCCGGAAGTTCAAttgttctctttctttgtccttcAGCCCCGGTTTCTTCTGCTGCTCTTCAGTCCGGACCTGAACAGATGAGACGACATGGAGTGTGATCACCACCAGCACTACTTCTACGACGAGATGGACGGAAGGATCGAAGACTTCTTCACGTCCACGGCGCCCAGCGAGGACATCTGGAAGAAGTTTGAGCTTCTCCCCACGCCGCCCGTGTCTCCCTCCAGGACTTTCCACGCGGGACGTGCGTTATTCCCGCTGTCGGCGTCGGAGCGGAGCATGTGGGCGTCGGACGATTACGGCGTGCTTCCTCTGAAGAAGCTCGACCCGCTGGACGTGTTCGGGAACCTGAGCTCCGTGGTGATTAAGGACTGCATGTGGAGCGGCGGGTTTAACGCCACCAGAGCGACCCCTCGCTCAGAAACGCATCAGAGCGAACTCGCGCACGTGAACGCACCACGGATCCAGAGCGCAGTGAGACAGACCGACGTACAGGTCACGAGGTGTGTGAACCCCGCAGCCGTCCTCAACCTGCCCGTGTCCCAGTCCAAAAAAACCCCGGCGTCCTCAGGATCCGAGTCGCGCTCGGACTCGTCCGatgatgatgatgagatcgATGTTGTGACGGTGGAGAACCGTTTGAAGAAGCGCACTCGCACGCCCATCACCATCGCCGTGAGCGCCGACCCGCACGGCCCGCGCAAGAAGCACTTCCACATCTCTCTGCACCGGCAGCAGCACAACTACGCCGCTCCGTCTCCGGAATCCGACGACgagcaccaccaccaccaccatcaccctGACGACGATGACAACGATGAAGAAGAGCCGCTCGGTAAGCGAGTTCGGATTGACCCTTCGCTCTTATCTGCTCCGTCGTCTTCCTCCTCGTCCTCTCCGGCCAGCTCAGACTCCGAGGACTCCACCGAGCAGCGCAGGAACTTCctggagaggaagaggagggacGACCTGCGATCTCGCTTCCAGATGCTCCGGAACGAAATTCCAGGTCTGTCAGAGTCTGCTAAAACCTCCAAGGTGGCCATCCTGACCCACGCCACGGAGTACCTGCTGCAGCTCCGGGCGCGAGAGAGACGGCAAGCGCAGGAGAGGAAGAAACTCCGAGCCAGACGACAGCTACTGCTGCGCAAAATCAGCGCCCTGAAAAAGCCATGAACTCAATCCGACAGATATTTATTCTGAATCTAAAGGGTTAATCTAAAGGTGGtgcgtttttcttttttttccttttttttcctttttttttttttttaaagcacagagAGCTAAAgctaactaacacacactttatgCAAAGAAGTCGAGTCAAATTCagaactgacaaaaaaaaaggaaaagaccAGACTGGAAAATAGCTGAGATCAGCTTAAAGATCCGGAAACTCTCGCAATACGCTTTACACAAACTGACGGAGGAATAAAACCGACAAACTCCTGCAAGAACCAAAAATCTGTGAACTCTAACCTCGTCTAATTGGGTCTTATCTCCTTAAAATAATCCCTGAACTTCACCTGAGGTTGAGTTGAGTCAGAAATAAGATGTGTAGAATCCTGAGATGCTGTGCTTTCTCACTCTGAGCTGAAAGTGTATCGtgctgtgatgtgatggtgaGGATCGTCGTGTCGTCTGTGTTTACTCAGGACCGCAGCggggagagaaaagaaaacaaaacactgttgaacttgtgtgtgtgctgatgtctGAGTCCTCAGCTCCTCTGATCGGCCGTTCTGTACCTGAAGAATCAAATGTAGGAATTGTGAGATTGCTTAAAGTTCGGCCCATGCCTAGTCATGTTTGCaagggtgggtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagagatgaTTAAACTGGACCGGTAATCATGTGTTCGTATCTTTACACCAGGTGAACTTTGCACATTAGGAGCAGGaagtatttgtgtttttcttcttcataaGAATGAAATGTTCCATTATttcctcgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgagtgtgagtaggGGGAAAGAGTGATGAACTACACAAGCTCTGCTCTCTGGTGATGCAGCGGTGTGTTTTAATGATGCACATCTTTCCATGTTGTCCTCAGttacctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacatgctGTTGTGATTGCTGTAGCATTTGCACATGCTCAAtagaggtttttgttttgttttgttttggacaCAACTCGAATCTGCACAATGGTGTTGTAAATACTTcgtcatttgtgtgtttttcacattcagattctattttgctaaaaaaaaattaaaataaaataaaaacaaatgcagatttaaaaaatgc

Function

NR:

description
PREDICTED: protein L-Myc-1a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67393 False 773 lncRNA 0.43 2 33480348 33520877
TU67394 False 1214 lncRNA 0.42 2 33519626 33520877
XM_034301506.1 True 2754 mRNA 0.50 3 33519683 33524819
XM_034301508.1 False 2713 mRNA 0.50 3 33519682 33524819

Neighbor

gene id symbol gene type direction distance location
six4a NA coding downstream 76624 33389493 ~ 33403724 (-)
six1a six1,six1b,LOC108263091,LOC108414064,LOC108257556,LOC107697302,LOC107589069,LOC108434988 coding downstream 92529 33385114 ~ 33387819 (-)
dhrs7 dhrs7 coding downstream 118483 33357030 ~ 33361865 (-)
prkcha prkch,LOC107707065,LOC107675581,LOC107757130 coding downstream 143553 33329005 ~ 33336795 (-)
hif1aa hif1a coding downstream 158685 33306312 ~ 33321663 (-)
LOC113541868 NA coding upstream 63074 33587893 ~ 33592807 (-)
si:dkey-157l19.2 LOC108262993 coding upstream 85638 33610457 ~ 33644218 (-)
lgmn lgmn,LOC100304954 coding upstream 120939 33645758 ~ 33656870 (-)
pcnx1 pcnx1,LOC108262680 coding upstream 138995 33663814 ~ 33692927 (-)
med6 med6,LOC107654960,LOC107602956,LOC107683373 coding upstream 169382 33694201 ~ 33698292 (-)
G57220 NA non-coding downstream 13041 33465699 ~ 33467307 (-)
G57317 NA non-coding downstream 57874 33421824 ~ 33422474 (-)
G57223 NA non-coding downstream 68895 33410548 ~ 33411453 (-)
G57302 ppm1a,LOC106571506 non-coding downstream 69577 33365057 ~ 33410771 (-)
G57335 NA non-coding upstream 10659 33535478 ~ 33535975 (-)
G57354 NA non-coding upstream 46591 33571410 ~ 33572419 (-)
G57356 NA non-coding upstream 50467 33575286 ~ 33576847 (-)
G57368 NA non-coding upstream 132175 33656994 ~ 33660021 (-)
G57379 NA non-coding upstream 176401 33701220 ~ 33762528 (-)
G57322 NA other downstream 18006 33455222 ~ 33462342 (-)
lrrc9 LOC108262921 other downstream 37533 33423664 ~ 33442815 (-)
slc38a6 slc38a6 other downstream 135512 33337403 ~ 33344836 (-)
G57210 NA other downstream 380776 33019278 ~ 33099572 (-)
G57124 pdss2,LOC102782659 other downstream 751607 32715827 ~ 32728741 (-)
trnag-gcc_5 NA other upstream 5108 33529927 ~ 33529997 (-)
LOC113542143 LOC108263078 other upstream 37959 33562778 ~ 33570236 (-)

Expression


Co-expression Network