G57224


Basic Information

Item Value
gene id G57224
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33369860 ~ 33375501 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU67396
aaaataaaaagtttatttcagtgtgaactgattaaaaacaacaacaaggaCCAAAAAGTTAAAAGACGAGTATTCAGAAGAGGAGGACATTCCTGTGATTTATTCTGTCcatatttccaaaaaaagaaaagaaaagaaaaacagaaagaatacaaatatacatctacatttcttaatataaaaaaaaaaaacagtttagcTTATGAGTGCGGCTAAACCTGACCCACTGACCATGTGGAGGAGAAGCaggagagcgtgtgtgtgtgtctggtttaATTtacagccccacacacacacacacacacacacacacacacacacacacacacacagattaaggCTAAGTGAACCTGCAGGTCGTCAGGAGCTGATAGTGAATTATACGATACATCATGATATTCAGTGTAAATGACTTCATCACACACTTAAAACACGTCTcctgttaaattaaaaattttttacatttattttggaaagcagcactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagagagagagagatcaacacTAATAgtcaatttcacacacaatatcacGATAATATCGTaaatccagatttttttttggggggggagGTATGTaaatgtctctcacacacacacacacacacacacacacacacacgcctactACACAGCATTTACacatgattaaaaaacacacacacacacacacacacacacagagaatgtGTAGAATTAATTCAggacatttaaaacacaaaaaaagattttaaagataTAAATGTGGACAATTATTTAGTATTTGGTTATTTGGTTAATTATTTAGCGAACAGCAGTCCTTATTACCTCAAAACACACTTTCAAAGTTTGTGTTTTCATGCCCAAGTGTGTTACATGAAATAAAGCATTCATAACACGTTATAAAGCACTAATTCCACAGACAAGCCGTATGAGACGTGTTTgatgatgaaacaaaaatgtgtaaaaataaaaaatcaaatcaaatctgaATAAAAGCCTGTTTTAAAGCTGTAAAATGGGAACGTGGTGTTCTGATGTACGCTGCTTCTCTCCGCGCAGGACACAGAAACGCTAAAACGTGtttgtcataaaaaaaaaaaattcaacgtTTGTTcgtaaaacaaataataactgtattatCGAGTTAAACTCATTGTATTGAccaaaaactaaataataaaattccacAGACTTCCTAATTACAGATATATTTTATGAATAccatcttttatttaaaatatcagaCTACAGTAAAATTCTggcactttattattattattattaaatgctcAGGTTTTaagttaaaacattattttgatTCCTGATTTTTGAGGTTTCtgagtttctgtgtttttcaaattttcacAGTTTTCTCACAGTTTTTGAACTCAGTTTTcagcagtttatttttttagacatgaaataaaagtaaaatcaaACTCGtggattaattgattgattgattgaaatagttttatagttttttttggGAGAAATGTaacactgctgttttgctgCCACAGCATCATGTATCGTATATAAACGACTCCAGGTATCGTGATGATGACATTTCGGTCGTATCGACCCGCCGCTAATCGTACAGGCGGCTGTGTGATATTTAAGAACAATCGCGTTATACTACGTGCTCTACTACAGCCGATTTCTCCGTTACAATccacaaatattaaattattaaatgtttaatattaatttttgaaTCGTCTAATAAACCATCAACGAAACACGTTACAACTTAttactacttcctgtttattgCCCCGCCTCCTAGTTTGATGGACAGCTgagatctgtttttttctcagcatGAAATAAGCAAATATCAGGAGAAACAGTATCGTGTTGTGATTATTCTGCGTCTCATCAGTTTATCAGCTCgagacaaaaatgaataaataaactacaataataaaatgctgtagTGTTTAAAGTTTAGTTTTTGTCCTTTGCATGTTGAAAGAGTGCTTTGAGTGTGTTATAAATGCTTTATTGAGATCAGATTAAAAGCATGAAACAGTTTCCTCATCacatgacagaaaaacagatggacagatgaacaGGACGGTTCTGTTCTgtttctcaggtttcctcctgTTTCACCTCCGTCAgattattacaaaaatattccCCAGTTCAACACGTGTTCAGATCCGTTATCTAGCATTAGATTGTCAATTCTGTTAATATAAGAATTCTATTTTGAATAAATTACCCTGTGAGGTTTAACAATGAAACACTGCAGTCTAAACACACTGGGTGGAATCGTTAGCTCTGAAATTAATCCCGCTAACAAACtctgaaaataaaatctgttttttattttttaatttttttttgattttttaaggAATCTGGTTTATTATTGAGGTTCGGCTCAGCAGGAGGGACACATGGACAAACTACCCACCAGAAATTAAAGAACTAAACAGAGCTATAGTACAGCgaacacacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagatgttcTCTCTGCAGAAATCagattttacagaaacatttacagcattgcccaatggagaaaaaaaaaaatcaacaattcCATCAACAAGTCTATTAATCAATCACACACTAGCAGCAAACAGTGTTCAGACATGTTCccgatttaaaacaaaaaaaaccacacaacagTAAACGTCCCAGAGCCTGAggaacagatacacacactcccaaagtggaacaaaaaaagctttgtgtttgttctctgctgaaaaatgtataaaaataaaaaacgtgTTCAGAAAGAAGAATACGGTAAAATAGAACAACATGGAAAAGCatcagctctacacacacacgcgcacacacgcgcacacgcgAGTACGTCCAGAACCAGGCAGCCGTCTGTTCTCCAGCAAAAACCCATCGTAAAGAAAAAACCCTCAGCTAACAGTTAAGTTAAAAAGTTAGAAGATGAACTGTTCCTATGACGTCACTGCGGCGTGTCAGTTACACGAACACGCCGTCAGTTTAGTTTCCAACCGGGAACACGGCGAGAGAAACATCACGAGCACCATGTGAAGAAGAACATGTTCTGAGAACGTTTTTCTGACGTTACAGATGAACGCTTGGGAGTTTTCCACACGGTGTCGGGTGTAAAAAGGACACGATGGCCGCGGCGAGCGTCGGGGAAAAGAGTGAAATCAGGTTCGGCGTATTCGCGGCTCCTGAACCAGCCGTacgttgttttatttgtttcgTCGGAAGACGATTGATTTGTGGCGAACCACGTGGTTTCTGCGTTCGTCCTGTAGCTCGCTGTGTTGTTTGTATGTTTCTGCAGTCATGTTACACTAACGGAGAAACCACGGCAACCACAGATAGGAACGCCCACTACAACAACGACCAATCAGAGGGCTTGTTCGGCTCAGAGTCTCGGCGTCCTCAGGTTGTGGTTCTGGATCGTCTTTTCTGCTTTATCCCATAATTCCTTTCACACGATACGTTTTAAAAACATCTCGCGacaccaccattttttttttgttctttttctttattcccAAATATCGCGGTGTAAAAACACATCGTCGGCACACGCCTGACGGAAATGTAGGAAAAACAAGCTTTCGAGCTGAAGAGTTGACATTTCCTATGACAAGGCAGATAGTGCATAAAggtttcctctttttttctttttttttatattttataaggtttagtcttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67396 True 3750 lncRNA 0.37 2 33369860 33375501

Neighbor

gene id symbol gene type direction distance location
dhrs7 dhrs7 coding downstream 7995 33357030 ~ 33361865 (-)
prkcha prkch,LOC107707065,LOC107675581,LOC107757130 coding downstream 33065 33329005 ~ 33336795 (-)
hif1aa hif1a coding downstream 48197 33306312 ~ 33321663 (-)
LOC113542112 NA coding downstream 76517 33286801 ~ 33293343 (-)
osr1 osr1,LOC108440809,LOC107548611,LOC107588719,LOC107668777,LOC107757107,LOC107675531 coding downstream 265617 33095656 ~ 33104243 (-)
six1a six1,six1b,LOC108263091,LOC108414064,LOC108257556,LOC107697302,LOC107589069,LOC108434988 coding upstream 9613 33385114 ~ 33387819 (-)
six4a NA coding upstream 13992 33389493 ~ 33403724 (-)
tdrd9 tdrd9,LOC104966444 coding upstream 92522 33468023 ~ 33484082 (-)
kif15 kif15 coding upstream 109512 33485013 ~ 33505325 (-)
tacc3 tacc3,LOC108440911 coding upstream 131593 33507094 ~ 33516686 (-)
G57300 NA non-coding downstream 5313 33363604 ~ 33364547 (-)
G57294 NA non-coding downstream 9169 33326080 ~ 33360691 (-)
G57292 NA non-coding downstream 64342 33303570 ~ 33305518 (-)
G57290 NA non-coding downstream 71547 33296819 ~ 33298313 (-)
G57275 syt14 non-coding downstream 112068 33257229 ~ 33257792 (-)
G57223 NA non-coding upstream 35047 33410548 ~ 33411453 (-)
G57317 NA non-coding upstream 46323 33421824 ~ 33422474 (-)
G57220 NA non-coding upstream 90198 33465699 ~ 33467307 (-)
G57335 NA non-coding upstream 159977 33535478 ~ 33535975 (-)
G57354 NA non-coding upstream 195909 33571410 ~ 33572419 (-)
slc38a6 slc38a6 other downstream 25024 33337403 ~ 33344836 (-)
G57210 NA other downstream 270288 33019278 ~ 33099572 (-)
G57124 pdss2,LOC102782659 other downstream 641119 32715827 ~ 32728741 (-)
slc66a3 pqlc3 other downstream 708248 32653836 ~ 32661612 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 980716 32374336 ~ 32389144 (-)
lrrc9 LOC108262921 other upstream 48163 33423664 ~ 33442815 (-)
G57322 NA other upstream 79721 33455222 ~ 33462342 (-)
mycla LOC108263077 other upstream 104847 33480348 ~ 33524819 (-)
trnag-gcc_5 NA other upstream 154426 33529927 ~ 33529997 (-)
LOC113542143 LOC108263078 other upstream 187277 33562778 ~ 33570236 (-)

Expression


Co-expression Network