lrrc9 (LOC108262921)


Basic Information

Item Value
gene id lrrc9
gene name LOC108262921
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33423664 ~ 33442815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU67416
GTCAGGACGGTGGATCTGGCTCCCGCTGAGCTCTTCGTGAATTTACACAGCTTGAATCTAGAGCGGAACAATCTCACCTCCTTCAGCGGCCTCGTCTACCTGCCCAACGTCAAGGTGTTGTGTCTGAACTACAACCACATTGAGTCGATTCTGCCAcgtcagaaaacacacactcacctgagcAGCAGACAGCAGCTCTATCAGAAAGTTCACTCCAGCGGCTACGGACAGCAGATCAGCAAGAGcagcagtaaggagtgtgtgtgtgtggagagtctGGAGCCTCTCATGTGCAGCTTGGAGGTTCTCCATCTCGGCTATAACGGCATCTCCAACCTCAGCGATGTGCAGCTGAGTTGCCTGAGCGGCCTGAGAGCTCTGTTCCTGCAGGgtaaTGAGATAGTGCAGGTGGAGGGTTTGGACGGTCTGAGTCTCCTGCGTGAGTTGGTGTTGGATCAGAACCGAGTGAAGACGCTCAGTGAGAAATggttcagctcacacacacgcctgaTCGAGCTGAGCCTGAACGACAACCGCCTGCGCAGCCTCACACACCTGCAGCTCACACACCTGCAACGCCTGCACCTCAGCAACAACAAGCTGCaggatatcACAGAGTTGGATAAACTGGAGGTTCTTACATCACTTGTAGAACTGTCTGTGGTGGGCAATCcggtggcgCGGCGCTCCCTCCACAGGCCTTCTGTGGTTCTGCGTCTCCCTCAGCTGCAGGTACTCGATGGAATCACGGTCACACTGGAGGAACGAACACGAGCAGAGTTACTGTgtactgagGACACACCCTCCTGTGTGGACGGGGCGTTCCCTGTCGTACTGTGTCGTGCTCCACCTGCCCGAAACTCCG
>XM_034302706.1
TTCGGGAGAAACTTTTCCAGAGCACGAGCTGGCTAAAACAAACACGAccactttaaaaacattaattccTTCTCATGTTAAACTTTATAGTGATATTTACTGTCTTGTTTAACTGTAGAAAGTAGAAATTTTCTACAAACGATGTTAGAAATGAGCTCGCTTCTACTGTAGTTTAATTGTGAAGAATAAAGATGCGAGTGAAAGTAATAAAATGATAGCAGCGCCCTCTGCTGGCCGAATGagggatttattttacaattccAATATGGCGCCTAATTCCAAAATGGCGCCTTAGCAACCGAGTCGCGGTCGCGCTTAGCAACCGGTAGAAGTAAACATTTCACGGAGGAAGAAACTCCGGTGTGGAAGCTCAGAAATGCGTTTTTAGCCAAAGAAGAAGCGAAATATTTGGATTTTCAGTCGACTATGTCCCTTATTCAGGCGAAAAAGCTTCACTTTAAACACCTGCTGTTAGATACTGGACTAACTCGGAGCAGTTAGCTAATGATGAACTGCTAATTGACTTGTGTGAAGGAATTTGCATtaattagcttagcttagcctAGCTATGCGGCTAGATTTAGTTTCTAATAAATTAAGATAAAGTTTTGATTTTTGTAAAAGCGGTGTTTTAAGGAAAATCATGACTCAAAGTGAAAAAGTGCGACAGAATGATGAAGAAATTATCAAAGAGCTGtgtgtgtgtaacggcGTGTCCTATGAGAAGGTTCGTGAGGACGGGAGTGGGGTAGAGGCTCTCGAGGCGTTCTTCTCAGGGTTTCCCCGCATGGTGGGACTCTCTCTGTTCCCCCGGCTGCTCTCGCTCACCATCGTGGGGCAGAACGTCCGCAAAATCCAGGGGCTGGACGACTGTCCGCGTCTCCGCGAGCTCTGGGTGGCAGAGTGTCAGCTCACTGAGATCTCAGGTCTGCAGAAGTGTGTGCAGCTGCAGAAACTGTTCCTCTATGATAATAAGATCAGCGAGATGAGCGGAATGGAGTCACTGATAAACCTGAGCGTCCTCTGGATCAACAACAACCTCGTCACCGAGATCAAGgGCTTGAGCACACTGGAGAACCTGACGGAACTCAACCTAGCTGATAATCTCATTACAACTATAGgaAAAAGTCTAGAGCAAAACAAGAATCTCCAAAGTCTCAATCTGTCAGGAAACAAGATCAGCTCTTTTAAGgagctGACCCAGCTGGCGTGTCTGACTGAGCTGAGAGAACTCGGGCTGAACGACCCGCAGTCGAGTCCGAACCccgtgtgtgtgctgtgtaatTACTTCACACACGTGTTGTACCACATCCCAACGCTACACACACTCGACTCGTATGACGTGTCCGCAAAAAACATCAAGGAGGCTgccgagtccacggtgatgaagaagaggatgTACTATCACATGCGTGTGCGCTGTGTGCAGAGACAGCTCGATCAGAcgaaacacacactgcagctacaGAAGAAGAAGCTGCGGCAGATACCTGAGGACAGAATACACACTCTCagctacacactcaaacacTTGGAGTGTGAGTACGAGGCTGCAGGCAGGCAATTGGCAGGTTTGCGAGAGGAAGTGACATCGCAGGGGTCGGGTGAAtacatgacctctgacctttctaaAGAGATGAAGATGAAACTGAAGGCAATCAGAGAGCGGATTAAGTTCTGGGAACAGAGATTagaggaggtGGAGGCACGTTTCCAGCAGGACGTTGCCATGGCGTCAGACAGGAAGGACATGTCGATTCACTTCCTGGTGATGGAACTGGAGACGGTGGGAAACATTCGCTTTGAGGAAGGAAACACCAGCCATGCCTGgtttAAGCCGTGTTACGACCTGCTGCTCTCTCGGTTCTGCGTCTGGGACTTCAAAGCGTACAACATCACCGGCCTGAAGATCAACAGGATCGTGCGCGTGCATAACCGCGTCCTGCGTCTGCGCTTCGAGGACAGACTGCACGCCCTGCTGGCGAACAACGAGTCCTCGCTTCTCTCGCAGAACTACAAACGCCGCCTGGAGTATCTGTTTTATGTGTTCGATCCTGAGGAAATCCAAAGAACCAACGAAATCCTGAACATTCTGGAGAAGGGGTTTAAATCAGCTGACGGTTATAAGgcCTTGGGTAGAGACTGTGCTGTGCCTCTGTCTAACAGCGTAAGCGCGTGTGAGGAGCCGCATGTAAGATTTGTTCGGAGAAAAGCCACCAGACGTGGAACCGAAAGCGCAGAGAACCCTCTGCCCTTCACACAGGGTCTGGATCTGGGAGCAAGAGACAAGGGGCAAGTGTGTGCGATGTGTGTGGAGTGTCAGATTGAGTGTGAAATGAGAGGATGtggcaggaggaggaagaggtgtGAGGATGgagaaGTGTATTCCTCTGAGCTGCAGGGATGCTGTGACTGCAGTCAGAGAAAAACTCTGTGGTACGTTTTCGACCGCGAGCTCGTTCTGCCGGAGTATCTCATCGACTTTGAATATGTCACGCAGGAGAGATCGCAGTCCTCCTGCCCTCCCAAAGCCCCTGCTGCCCCTGATGATGTCACACCGGGGTGTAACGATGAGCAGGCCCTGGACGAGCAGGTGTTATCACTTCAGCCCGTCCCGAAGCCACGACCCAAACTGCTGAGCCTGGACGAGAGTAGTGTCCTGACAGCGGCTCGAGCCAACGTCCTCAGCCAGATCACCgTGCTGAATCTTCACGGGAACAGTCTGAGCAGGCTGAAGGAGATTTCTCGCCTCACGGCGCTGCGGCAGCTGATCATCAGCTTCAACGCCCTCACACACCTGGACGACGTTTCACACCTGCCCAATCTGGAGTGTGTGGACGCCAGTTTTAACCAGATCGTGACTCTGGAAGGCGTTCGAGGACTTCCCCGTCTCAGAGAGCTGGACCTGCGCTGGAACCAGCTGAGCCGAGTCCGAGAGGAGACGAGCGTCCtgcgcaaacacacaccatctctGCTGCGCCTCCATGCCAGACACAACCCGTGGAGTCAGggtgagTCAGTGCGGATGGTGGTGTTGGGCCAGTTGAAGAATCTCACACACCTGGATGGAGTGTTAGTGACGGAGGAGGAGGTGGCAGCTGCTACACACGTGAACTCCACCTCCAAGATCAacctgatgttgcTGCTCTCTCACTCCCGTACCGATGCCGATCGTCCGCGCTGCCTGAGTCTCCTCACTGTGGCCCAGCTCCTCACACACCTCAAACCATCGCCATGGAAACACACCACTGACCTCGAACCTGGGTGGGGTGCCAAggtcaCAGCGTTGAATCTGGACGGTCAGCGTCTGTCCCACATCAGTAATCTGGAGCAGCTGGTGAATCTGCGCTGGGCTTCGTTTAATAATAACCAGCTCACACACATCGAGGGGCTGCAgcactgccccctgctggaggAGCTGTCACTGAACCACAACTACATCTGCACACTGGAGggtgCGTGTAAGCTCCAGCGTCTGACGCGACTCAGCATTAACAGTAATCAGCTGCGATGTTTGGACGCCTCTGTGTTGGACCGCCTGACGAATCTCCACTTCCTGTCCGCTGAGGACAACTGCATTTCCTCCCTGCAGGGGGTTCAGAGGTCACGCTCACTGTTTGAGCTTTATGtcagcaacaacaacatcagcaCCTCGCGAGACATCTATCACCTGAAgACTCTGAGTAACCTGATCATCCTGGACTTGTACGGCAACCCATTAACAAGAACACTGGAGAATTATCGAGCTTACCTCATCTTTCACCTGCCGTCTCTGAAAGCTCTGGATGGGACTGCTGtgGAGATGTCAGAGTGTGAGAATGCGAAGGACGTGTTTGGAGGTAGGCTGACGGCGGACATGTTGGCTGAGAAACTCGGTCAGTGTGACtacagagagatggaggagctGGAGCTCCCGGGCTGCTCCGTCAGGACGGTGGATCTGGCTCCCGCTGAGCTCTTCGTGAATTTACACAGCTTGAATCTAGAGCGGAACAATCTCACCTCCTTCAGCGGCCTCGTCTACCTGCCCAACGTCAAGGTGTTGTGTCTGAACTACAACCACATTGAGTCGATTCTGCCAcgtcagaaaacacacactcacctgagcAGCAGACAGCAGCTCTATCAGAAAGTTCACTCCAGCGGCTACGGACAGCAGATCAGCAAGAGcagcagtaaggagtgtgtgtgtgtggagagtctGGAGCCTCTCATGTGCAGCTTGGAGGTTCTCCATCTCGGCTATAACGGCATCTCCAACCTCAGCGATGTGCAGCTGAGTTGCCTGAGCGGCCTGAGAGCTCTGTTCCTGCAGGgtaaTGAGATAGTGCAGGTGGAGGGTTTGGACGGTCTGAGTCTCCTGCGTGAGTTGGTGTTGGATCAGAACCGAGTGAAGACGCTCAGTGAGAAATggttcagctcacacacacgcctgaTCGAGCTGAGCCTGAACGACAACCGCCTGCGCAGCCTCACACACCTGCAGCTCACACACCTGCAACGCCTGCACCTCAGCAACAACAAGCTGCaggatatcACAGAGTTGGATAAACTGGAGGTTCTTACATCACTTGTAGAACTGTCTGTGGTGGGCAATCcggtggcgCGGCGCTCCCTCCACAGGCCTTCTGTGGTTCTGCGTCTCCCTCAGCTGCAGGTACTCGATGGAATCACGGTCACACTGGAGGAACGAACACGAGCAGAGTTACTGTgtactgagGACACACCCTCCTGTGTGGACGGGGCGTTCCCTGTCGTACTGTGTCGTGCTCCACCTGCCCGAAACTCCGAGTAA

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 9-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67416 False 865 TUCP 0.55 7 33423669 33429769
XM_034302706.1 True 4795 mRNA 0.52 30 33423664 33442815

Neighbor

gene id symbol gene type direction distance location
six4a NA coding downstream 19940 33389493 ~ 33403724 (-)
six1a six1,six1b,LOC108263091,LOC108414064,LOC108257556,LOC107697302,LOC107589069,LOC108434988 coding downstream 35845 33385114 ~ 33387819 (-)
dhrs7 dhrs7 coding downstream 61799 33357030 ~ 33361865 (-)
prkcha prkch,LOC107707065,LOC107675581,LOC107757130 coding downstream 86869 33329005 ~ 33336795 (-)
hif1aa hif1a coding downstream 102001 33306312 ~ 33321663 (-)
tdrd9 tdrd9,LOC104966444 coding upstream 25208 33468023 ~ 33484082 (-)
kif15 kif15 coding upstream 42198 33485013 ~ 33505325 (-)
tacc3 tacc3,LOC108440911 coding upstream 64279 33507094 ~ 33516686 (-)
LOC113541868 NA coding upstream 145078 33587893 ~ 33592807 (-)
si:dkey-157l19.2 LOC108262993 coding upstream 167642 33610457 ~ 33644218 (-)
G57317 NA non-coding downstream 1190 33421824 ~ 33422474 (-)
G57223 NA non-coding downstream 12211 33410548 ~ 33411453 (-)
G57302 ppm1a,LOC106571506 non-coding downstream 12893 33365057 ~ 33410771 (-)
G57232 NA non-coding downstream 17538 33370775 ~ 33406126 (-)
G57224 NA non-coding downstream 48163 33369860 ~ 33375501 (-)
G57220 NA non-coding upstream 22884 33465699 ~ 33467307 (-)
G57335 NA non-coding upstream 92663 33535478 ~ 33535975 (-)
G57354 NA non-coding upstream 128595 33571410 ~ 33572419 (-)
G57356 NA non-coding upstream 132471 33575286 ~ 33576847 (-)
G57368 NA non-coding upstream 214179 33656994 ~ 33660021 (-)
slc38a6 slc38a6 other downstream 78828 33337403 ~ 33344836 (-)
G57210 NA other downstream 324092 33019278 ~ 33099572 (-)
G57124 pdss2,LOC102782659 other downstream 694923 32715827 ~ 32728741 (-)
slc66a3 pqlc3 other downstream 762052 32653836 ~ 32661612 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 1034520 32374336 ~ 32389144 (-)
G57322 NA other upstream 12407 33455222 ~ 33462342 (-)
mycla LOC108263077 other upstream 37533 33480348 ~ 33524819 (-)
trnag-gcc_5 NA other upstream 87112 33529927 ~ 33529997 (-)
LOC113542143 LOC108263078 other upstream 119963 33562778 ~ 33570236 (-)

Expression


Co-expression Network