G57292


Basic Information

Item Value
gene id G57292
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33303570 ~ 33305518 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU67471
aatcctaacaaTAATCCCGCCTCTAATCCTAACAATAACCCCGCTTCTAACTCTCACTCCATCCCAAACCCCATCTCTaatcctaacactaaccctgccTCTAACTCTAAATACACCCCAAACCCCACCTCTaatcctaacactaaccctgcCTCTaatcctaacactaaccctgccTCTAACTCTAAATACACCCCAAACCCCACCTCTaatcctaacactaaccctgcctctaatcctaacactaaccctgcctctaatcctaacactaaccCCGCCTCTaatcctaacactaaccctgcctctaatcctaacactaaccccGCCTCTAATCCTAACAATAACCCCACCTCTAATCCTAACAATAACCCCGCCTCTAACTCTAATTCCACCCCAAACCCCACCGCTAATTCTAACAATAGCCCCGCCTCTAATCCTAGCCCCGCCCCTGACTTTAATCTTTACAACATGCTGTTGTGAATAACATCCCAAGTTCTAATTTCAGTTAAAATTTACCCCACTGTTTAACCATTcttgtacttttaaaaataattattatatatatttcatatgtgCTTCCATAAATGTACGGATTCTTGCAACACATTTGAGTATTTTGATATTGAGGTTAGAATCGAGaggtcttttatttattttattttatttatgctgtATGTGGCATCTTCAGGTTCCATCAGCACACAAACCAGTGAATTACTTTACTGTGTATTTAACGTACACTGGTGTTTAAACACCACTCGGCTTCAGACGCACAACTGTAGATACAGGAACAAATTACCAGCAGCTCTCgcaatataatatattttttttaataattactgtccatttttttttgtctcattttcgAACCAAAGTACAAACTGTGCAGTTACAGTAATGTCTAATTGTCTGTTATATCTGTGTGAAATCAGAGATTTAAATGTgtctaaaatataaatctaaaatatataacatgtatataaaatacataatgacATATTTTAGAAATGAAACTTAAAGGTTGactaaatatgtatttatatatgataTGTATCTAcatgatattataatatatatatatatatataaaatgtacataaacacacatgtattgtgtttattaatatttctgtCAGTGTATTAATGTAAAGAGAAGATTTGTGGTCCATACTGTATGAAAACTTGTAAATTAGTACCACATGGAATTCCTGTCGACTGTCACAATGTCGTGTTTCACGGTTGCTGTTATTCCCTCGATTTACGTGTAACTCAtgacgtgtttgtgtgttatgtggGAAAATCGCcatgtctttctctgtgtttaaaatgaaattaaagttGCTGTGGCTGGTTCTGGTGCTATGATGTTTCCATAATCGTCTATACTGTACGTTACTGCTAATTACTCTATCGTGAGATGAGTCGTGAGAGCGGCGTGAATGTCGCACTGTAACGTGATACGATAAACGTCTCGGATGGCGTTGTACACGACACAGTACAAATCATTCACGGTGACGTGCACTGTGGACTGAATCTTCACcgaataaatggatttttaaaaagttatttaacaaagaaaaacaatcattgatatgatgtatttgtctgtaaatgtgacgtttatttaacacccatggaaggagtctccagtgttcaaagtcttcaggacagtgtatgagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67471 True 1680 lncRNA 0.36 4 33303570 33305518

Neighbor

gene id symbol gene type direction distance location
LOC113542112 NA coding downstream 10227 33286801 ~ 33293343 (-)
osr1 osr1,LOC108440809,LOC107548611,LOC107588719,LOC107668777,LOC107757107,LOC107675531 coding downstream 199327 33095656 ~ 33104243 (-)
rdh14a rdh14,LOC105895584,LOC104955673 coding downstream 435215 32865245 ~ 32868355 (-)
mtres1 c3h6orf203 coding downstream 539226 32759671 ~ 32764344 (-)
sobpa sobp,LOC107706905,LOC107588585 coding downstream 593359 32669506 ~ 32710211 (-)
hif1aa hif1a coding upstream 794 33306312 ~ 33321663 (-)
prkcha prkch,LOC107707065,LOC107675581,LOC107757130 coding upstream 23487 33329005 ~ 33336795 (-)
dhrs7 dhrs7 coding upstream 51512 33357030 ~ 33361865 (-)
six1a six1,six1b,LOC108263091,LOC108414064,LOC108257556,LOC107697302,LOC107589069,LOC108434988 coding upstream 79596 33385114 ~ 33387819 (-)
six4a NA coding upstream 83975 33389493 ~ 33403724 (-)
G57290 NA non-coding downstream 5257 33296819 ~ 33298313 (-)
G57275 syt14 non-coding downstream 45778 33257229 ~ 33257792 (-)
G57267 NA non-coding downstream 67858 33234666 ~ 33235712 (-)
G57215 NA non-coding downstream 234885 33067534 ~ 33068685 (-)
G57169 NA non-coding downstream 503098 32799111 ~ 32800472 (-)
G57294 NA non-coding upstream 20562 33326080 ~ 33360691 (-)
G57300 NA non-coding upstream 58086 33363604 ~ 33364547 (-)
G57302 ppm1a,LOC106571506 non-coding upstream 59539 33365057 ~ 33410771 (-)
G57224 NA non-coding upstream 64342 33369860 ~ 33375501 (-)
G57232 NA non-coding upstream 65257 33370775 ~ 33406126 (-)
G57210 NA other downstream 203998 33019278 ~ 33099572 (-)
G57124 pdss2,LOC102782659 other downstream 574829 32715827 ~ 32728741 (-)
slc66a3 pqlc3 other downstream 641958 32653836 ~ 32661612 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 914426 32374336 ~ 32389144 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 949070 32346755 ~ 32354500 (-)
slc38a6 slc38a6 other upstream 31885 33337403 ~ 33344836 (-)
lrrc9 LOC108262921 other upstream 118146 33423664 ~ 33442815 (-)
G57322 NA other upstream 149704 33455222 ~ 33462342 (-)
mycla LOC108263077 other upstream 174830 33480348 ~ 33524819 (-)
trnag-gcc_5 NA other upstream 224409 33529927 ~ 33529997 (-)

Expression


Co-expression Network