G57302 (ppm1a,LOC106571506)


Basic Information

Item Value
gene id G57302
gene name ppm1a,LOC106571506
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33365057 ~ 33410771 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU67483
gtgtgtgtgtgtgtgtgtgtgtgtgacatcaagagagagaagctcacCTGGAAGTCGGGGTTGCTGGTGATGTGCTCGAGCAGGTGTTCGCAGCAGTAGCGGGCGACCTGAGAGCCGGCGTGGCCGTCGTACACGGCGAAGAAGGACCAGGGCTCGAGGCCGTGCGGGAGACCGATGACGGCCGTGTGAGCGTCCTCCATCTCCACGCGCCAGCCCTGCATGCTGCTCACGCCGTAGCGCAGCCCATTCCCCTCGCCGTGAACGTTCTGCTTCTCCATCTTCGGCTTGTCCAGGAACGCACCCATCTCTCACGCC

Function

symbol description
ppm1a Enables R-SMAD binding activity and calmodulin-dependent protein phosphatase activity. Involved in peptidyl-threonine dephosphorylation; positive regulation of transcription, DNA-templated; and regulation of signal transduction. Located in cytosol; nucleus; and plasma membrane.

NR:

description
PREDICTED: protein phosphatase 1A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67483 True 315 lncRNA 0.63 2 33365057 33410771

Neighbor

gene id symbol gene type direction distance location
dhrs7 dhrs7 coding downstream 3192 33357030 ~ 33361865 (-)
prkcha prkch,LOC107707065,LOC107675581,LOC107757130 coding downstream 28262 33329005 ~ 33336795 (-)
hif1aa hif1a coding downstream 43394 33306312 ~ 33321663 (-)
LOC113542112 NA coding downstream 71714 33286801 ~ 33293343 (-)
osr1 osr1,LOC108440809,LOC107548611,LOC107588719,LOC107668777,LOC107757107,LOC107675531 coding downstream 260814 33095656 ~ 33104243 (-)
tdrd9 tdrd9,LOC104966444 coding upstream 57252 33468023 ~ 33484082 (-)
kif15 kif15 coding upstream 74242 33485013 ~ 33505325 (-)
tacc3 tacc3,LOC108440911 coding upstream 96323 33507094 ~ 33516686 (-)
LOC113541868 NA coding upstream 177122 33587893 ~ 33592807 (-)
si:dkey-157l19.2 LOC108262993 coding upstream 199686 33610457 ~ 33644218 (-)
G57300 NA non-coding downstream 510 33363604 ~ 33364547 (-)
G57294 NA non-coding downstream 4366 33326080 ~ 33360691 (-)
G57292 NA non-coding downstream 59539 33303570 ~ 33305518 (-)
G57290 NA non-coding downstream 66744 33296819 ~ 33298313 (-)
G57275 syt14 non-coding downstream 107265 33257229 ~ 33257792 (-)
G57317 NA non-coding upstream 11053 33421824 ~ 33422474 (-)
G57220 NA non-coding upstream 54928 33465699 ~ 33467307 (-)
G57335 NA non-coding upstream 124707 33535478 ~ 33535975 (-)
G57354 NA non-coding upstream 160639 33571410 ~ 33572419 (-)
G57356 NA non-coding upstream 164515 33575286 ~ 33576847 (-)
slc38a6 slc38a6 other downstream 20221 33337403 ~ 33344836 (-)
G57210 NA other downstream 265485 33019278 ~ 33099572 (-)
G57124 pdss2,LOC102782659 other downstream 636316 32715827 ~ 32728741 (-)
slc66a3 pqlc3 other downstream 703445 32653836 ~ 32661612 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 975913 32374336 ~ 32389144 (-)
lrrc9 LOC108262921 other upstream 12893 33423664 ~ 33442815 (-)
G57322 NA other upstream 44451 33455222 ~ 33462342 (-)
mycla LOC108263077 other upstream 69577 33480348 ~ 33524819 (-)
trnag-gcc_5 NA other upstream 119156 33529927 ~ 33529997 (-)
LOC113542143 LOC108263078 other upstream 152007 33562778 ~ 33570236 (-)

Expression


Co-expression Network