G57354


Basic Information

Item Value
gene id G57354
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33571410 ~ 33572419 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU67540
aatgttaatgataatgttaatattaatgataatgctaatgttaatgctaatgataatattaatgataatgctaatgctaatgttaatatcaatgataatatcaatgataatgttaatgataatgttaatgctaatgctaatgttaatgttaatgctaatattaatgataattgTAATATCGTAGTGCAGAAACTCACAGAAGGAAAACCATAACTCTTTGTGGTCGCTTTATTGAAGCGTCTCAGCAGGCAGACAGAACAGGACAATGGTGCAGAAACTCACTGCTCTTCTTCACAGCCTTTTATGACTATCCAACCCATAGACAATGCATTACCGCCCCCTACTGGACAAATCTCAATAAACCCTCCTCACGTATCACAGTAATGCTAATGATaatgttaaagaaatgtttgtactgttactaattcatttaatttgtttgttaatgtcatgcctttttctgttcttcatattcacattttatattttgcatttttttcacattatattaaaatcaataaacaaatgTCAGTTTATGaaaactgttaaaataaaaagggTTAAATTCCCGGCATACA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05168 Herpes simplex virus 1 infection
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU67540 True 578 lncRNA 0.30 2 33571410 33572419

Neighbor

gene id symbol gene type direction distance location
tacc3 tacc3,LOC108440911 coding downstream 54724 33507094 ~ 33516686 (-)
kif15 kif15 coding downstream 66085 33485013 ~ 33505325 (-)
tdrd9 tdrd9,LOC104966444 coding downstream 87328 33468023 ~ 33484082 (-)
six4a NA coding downstream 167686 33389493 ~ 33403724 (-)
six1a six1,six1b,LOC108263091,LOC108414064,LOC108257556,LOC107697302,LOC107589069,LOC108434988 coding downstream 183591 33385114 ~ 33387819 (-)
LOC113541868 NA coding upstream 15474 33587893 ~ 33592807 (-)
si:dkey-157l19.2 LOC108262993 coding upstream 38038 33610457 ~ 33644218 (-)
lgmn lgmn,LOC100304954 coding upstream 73339 33645758 ~ 33656870 (-)
pcnx1 pcnx1,LOC108262680 coding upstream 91395 33663814 ~ 33692927 (-)
med6 med6,LOC107654960,LOC107602956,LOC107683373 coding upstream 121782 33694201 ~ 33698292 (-)
G57335 NA non-coding downstream 35435 33535478 ~ 33535975 (-)
G57220 NA non-coding downstream 104103 33465699 ~ 33467307 (-)
G57317 NA non-coding downstream 148936 33421824 ~ 33422474 (-)
G57223 NA non-coding downstream 159957 33410548 ~ 33411453 (-)
G57232 NA non-coding downstream 165284 33370775 ~ 33406126 (-)
G57356 NA non-coding upstream 2867 33575286 ~ 33576847 (-)
G57368 NA non-coding upstream 84575 33656994 ~ 33660021 (-)
G57379 NA non-coding upstream 128801 33701220 ~ 33762528 (-)
G57378 l2hgdh non-coding upstream 130086 33702505 ~ 33704326 (-)
G57390 NA non-coding upstream 155837 33728256 ~ 33737485 (-)
LOC113542143 LOC108263078 other downstream 1174 33562778 ~ 33570236 (-)
trnag-gcc_5 NA other downstream 41413 33529927 ~ 33529997 (-)
mycla LOC108263077 other downstream 46591 33480348 ~ 33524819 (-)
G57322 NA other downstream 109068 33455222 ~ 33462342 (-)
lrrc9 LOC108262921 other downstream 128595 33423664 ~ 33442815 (-)

Expression


Co-expression Network