Gene
RNA
| Item | Value |
|---|---|
| gene id | G57378 |
| gene name | l2hgdh |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 33702505 ~ 33704326 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| l2hgdh | Predicted to enable (S)-2-hydroxy-acid oxidase activity and 2-hydroxyglutarate dehydrogenase activity. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in 2-hydroxyglutaric aciduria; L-2-hydroxyglutaric aciduria; cerebellar ataxia; hereditary spastic paraplegia; and visual epilepsy. Orthologous to human L2HGDH (L-2-hydroxyglutarate dehydrogenase). |
| description |
|---|
| PREDICTED: LOW QUALITY PROTEIN: L-2-hydroxyglutarate dehydrogenase, mitochondrial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU67568 | True | 857 | lncRNA | 0.51 | 3 | 33702505 | 33704326 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| med6 | med6,LOC107654960,LOC107602956,LOC107683373 | coding | downstream | 4213 | 33694201 ~ 33698292 (-) |
| pcnx1 | pcnx1,LOC108262680 | coding | downstream | 9578 | 33663814 ~ 33692927 (-) |
| lgmn | lgmn,LOC100304954 | coding | downstream | 45635 | 33645758 ~ 33656870 (-) |
| si:dkey-157l19.2 | LOC108262993 | coding | downstream | 58287 | 33610457 ~ 33644218 (-) |
| LOC113541868 | NA | coding | downstream | 109698 | 33587893 ~ 33592807 (-) |
| LOC117596872 | NA | coding | upstream | 60497 | 33764823 ~ 33769298 (-) |
| LOC113541951 | NA | coding | upstream | 70230 | 33774556 ~ 33776425 (-) |
| G57368 | NA | non-coding | downstream | 42484 | 33656994 ~ 33660021 (-) |
| G57356 | NA | non-coding | downstream | 125658 | 33575286 ~ 33576847 (-) |
| G57354 | NA | non-coding | downstream | 130086 | 33571410 ~ 33572419 (-) |
| G57335 | NA | non-coding | downstream | 166530 | 33535478 ~ 33535975 (-) |
| G57220 | NA | non-coding | downstream | 235198 | 33465699 ~ 33467307 (-) |
| G57390 | NA | non-coding | upstream | 23930 | 33728256 ~ 33737485 (-) |
| LOC113541873 | NA | non-coding | upstream | 57192 | 33761518 ~ 33764287 (-) |
| LOC113542143 | LOC108263078 | other | downstream | 132269 | 33562778 ~ 33570236 (-) |
| trnag-gcc_5 | NA | other | downstream | 172508 | 33529927 ~ 33529997 (-) |
| mycla | LOC108263077 | other | downstream | 177686 | 33480348 ~ 33524819 (-) |
| G57322 | NA | other | downstream | 240163 | 33455222 ~ 33462342 (-) |
| lrrc9 | LOC108262921 | other | downstream | 259690 | 33423664 ~ 33442815 (-) |
