LOC113541873


Basic Information

Item Value
gene id LOC113541873
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33761518 ~ 33764287 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU67602
GATGATGTACTgcagtaactgtgtgtgtaactctGTGGGATGAAGTTTCTGTTAAACTCCTAACCTGTTTACTTCTATTtaaccatcttcatcatcatcttcatcctcctcctctctgcagTGTCCTTTACAATGCGCCGTCGCAGATCAGTCAAGTCTGACGTGAGCCGAAGTGAAGATCCTGAActttcagcacaaaaacaacagaagcaTCAAGAAGAACCTCAGATGAACATCAGACAAAGAAGATCTCTGATTATTCCTCTTAATTTCTCCTCACAAGTTGAGAGCAAGAACATCATGGGCATGTATCTCCAAACCAGCGCTGTGCATCCAAACCCATTAACAACAGCAATTACAACGAGTGTGTGAGAGTTCAGCGGAGCAGATTCACGACGTCCAAATGCCTCTCTGTGTCTGACGCCAtgttgctcacacacacgcacacccacacacacacacacacacccagtgtcAGCTCATTATAATTATAGAAATGTGATTATTACCTGCTTCTGCACTTCTGTAAAAATAATCCTGATTTGTGTTTTAATCCACAAACGTTGAAATGATTCTTTCACTTAGAATGTTTATGAGTCTAAATAACATTATACAATAACA
>TU67605
cgtagcctcaccaggtgccatgttcccctccaccatggAGCAGAGTgccataaatgactgtcgtgtcatcctaaagttctccttccactcctcgtctgtgaagtggtgcaagacgacgttgtcccaccggtccttgcttcggaccctcatccacagacgATGCGCCGTCGCAGATCAGTCAAGTCTGACGTGAGCCGAAGTGAAGATCCTGAActttcagcacaaaaacaacagaagcaTCAAGAAGAACCTCAGATGAACATCAGACAAAGAAGATCTCTGATTATTCCTCTTAATTTCTCCTCACAAGTTGAGAGCAAGAACATCATGGGCATGTATCTCCAAACCAGCGCTGTGCATCCAAACCCATTAACAACAGCAATTACAACGAGTGTGTGAGAGTTCAGCGGAGCAGATTCACGACGTCCAAATGCCTCTCTGTGTCTGACGCCAtgttgctcacacacacgcacacccacacacacacacacacacccagtgtcAGCTCATTATAATTATAGAAATGTGATTATTACCTGCTTCTGCACTTCTGTAAAAATAATCCTGATTTGTGTTTTAATCCACAAACGTTGAAATGATTCTTTCACTTAGAATGTTTATGAGTCTAAATAACATTATACAATAACA
>XR_004577865.1
tctctcactctctctctctcacacacacacacacacacacacacacacacacttctccccGCCTCCTCACACACCCACGTcacaggattaaccaatcagagtgcactaaaaaaaaagcgCGAATAAATTGAAAGTAAAGATGATGTACTgcagtaactgtgtgtgtaactctGTGGGATGAAGTTTCTGTTAAACTCCTAACCTGTTTACTTCTATTtaaccatcttcatcatcatcttcatcctcctcctctctgcagTGTCCTTTACAATGCGCCGTCGCAGATCAGTCAAGTCTGACGTGAGCCGAAGTGAAGATCCTGAActttcagcacaaaaacaacagaagcaTCAAGAAGAACCTCAGATGAACATCAGACAAAGAAGATCTCTGATTATTCCTCTTAATTTCTCCTCACAAGTTGAGAGCAAGAACATCATGGGCATGTATCTCCAAACCAGCGCTGTGCATCCAAACCCATTAACAACAGCAATTACAACGAGTGTGTGAGAGTTCAGCGGAGCAGATTCACGACGTCCAAATGCCTCTCTGTGTCTGACGCCAtgttgctcacacacacgcacacccacacacacacacacacacccagtgtcAGCTCATTATAATTATAGAAATGTGATTATTACCTGCTTCTGCACTTCTGTAAAAATAATCCTGATTTGTGTTTTAATCCACAAACGTTGAAATGATTCTTTCACTTAGAATGTTTATGAGTCTAAATAACATTATACAATAACACTAGATTGTAAATATAGTAaattacactatatatatagtatttgtaTGTAGAATCACTGCGATTATTTATATTGACTTTTGAATACAGAAATGAATCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67602 False 621 lncRNA 0.41 3 33761617 33763623
TU67605 False 648 lncRNA 0.45 3 33761617 33764287
XR_004577865.1 True 858 lncRNA 0.40 3 33761518 33763761

Neighbor

gene id symbol gene type direction distance location
med6 med6,LOC107654960,LOC107602956,LOC107683373 coding downstream 63226 33694201 ~ 33698292 (-)
pcnx1 pcnx1,LOC108262680 coding downstream 68591 33663814 ~ 33692927 (-)
lgmn lgmn,LOC100304954 coding downstream 104648 33645758 ~ 33656870 (-)
si:dkey-157l19.2 LOC108262993 coding downstream 117300 33610457 ~ 33644218 (-)
LOC113541868 NA coding downstream 168711 33587893 ~ 33592807 (-)
LOC117596872 NA coding upstream 536 33764823 ~ 33769298 (-)
LOC113541951 NA coding upstream 10269 33774556 ~ 33776425 (-)
G57390 NA non-coding downstream 24033 33728256 ~ 33737485 (-)
G57378 l2hgdh non-coding downstream 57192 33702505 ~ 33704326 (-)
G57368 NA non-coding downstream 101497 33656994 ~ 33660021 (-)
G57356 NA non-coding downstream 184671 33575286 ~ 33576847 (-)
G57354 NA non-coding downstream 189099 33571410 ~ 33572419 (-)
LOC113542143 LOC108263078 other downstream 191282 33562778 ~ 33570236 (-)
trnag-gcc_5 NA other downstream 231521 33529927 ~ 33529997 (-)
mycla LOC108263077 other downstream 236699 33480348 ~ 33524819 (-)
G57322 NA other downstream 299176 33455222 ~ 33462342 (-)
lrrc9 LOC108262921 other downstream 318703 33423664 ~ 33442815 (-)

Expression


Co-expression Network