ppa2 (ppa2,LOC108414713)


Basic Information

Item Value
gene id ppa2
gene name ppa2,LOC108414713
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 925951 ~ 937449 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910937.2
GGCCTAACGCATGGAGCCTGAGGGCGGCTGAAGGAGGAGGCGTTCCCGCGGAAGAAGGAGGAACCGAGCGGCCCGGAGCTACAGCTAAAATGATGCGCTCGCTCTTCCGGGAGAGTTTCTCCAAAGCCGCTTTTCACAGAAGAATGTTTCATTACCTGACGGAGGAGAGAGGCCGCCCGAACTCACCTGACTACCGCATTTATTTTAAAACCTCACATGGGAAATACATTTCTCCGTTCCACGACATCCCCCTCTACGCACCTGAGCAACAGGAGAATGACGTCCCAGCGAAGAAACAGAAATGCTCTGACAGTGAGATTCTCTTCAACATGGTCGTGGAGGTTCCTCGCTGGTCGAATGCCAAGATGGAGATAGCCACAAAGGAAGCGCTAAACCCCATTAAACAGGACGTGAAGAAAGGCAAACTGCGATATGTGGCCAACGTTTTCCCACATAAAGGCTACATCTGGAACTACGGCGCTCTGCCGCAGACCTGGGAGGATCCCAATCACACAGATAAAGACACCAACTGCTGTGGAGACAACGACCCCATAGACGTGTGCGACATCGGCACCAGGgtgtgCTCCTCTGGCCAGGTGATCCAGGTGAAGGTGCTCGGGATTCTGGCGCTGATTGATGAAGGAGAGACGGACTGGAAAGTCATCGCCATCAACGCTGACGATCCTGATGCTAATAAACTTCACAGTATTGAGGACGTTCGTGTGAACAGACCCGGTCATCTGGAGGCTACGGTGGATTGgtttagaaaatataaaatacctGACGGGAAACCGGAGAACCAGTTCGCCTTTAATGCACAATTCAAGGACAAGgacTTCGCTGTAGAGGTGATTAAAtccacacacagctgctggaAAGCTCTGGTGCAGAAACAGACGAAATGTGGAGAGATCGTGTGtcaGAACTCGTCGGTGTGTGACAGCCCGTTCCAGTGCAGTGACGCCGACGCCGCCGCAGTCGTCCGAGCTGCTCCAGAGTATGGAGAAGCTTTACCATTTCCTGCAAAAGTGGATAAATGGCATTTCCTGTCCCAGTGATCCTGAACGGTTCGAGCTCCGTCCCAGATCTCACTCAGAACACTGacacatgaatttatttatagagtGGAAATGTGTTCCTGTTTCCCAGAAGAGACACAAATCAGCTTCACTTCATTCGTGATTTAGTATTATTTCATCACCTAAATTATAAATTCACTCTGCATCACTTCAGCgattaatgattcatttttttactaGATTAGCAAACTGAATTTTGTGCCAAAACATTTggtttatattttgaaaaaaaaaagattatttgtaaaattgtatttggtgtaaaaatataatttaaaaatggcatttaCT

Function

symbol description
ppa2 Predicted to enable inorganic diphosphatase activity and magnesium ion binding activity. Predicted to be involved in phosphate-containing compound metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to several human genes including PPA2 (inorganic pyrophosphatase 2).

NR:

description
PREDICTED: inorganic pyrophosphatase-like

GO:

id name namespace
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004427 inorganic diphosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01507 ppa; inorganic pyrophosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910937.2 True 1370 mRNA 0.47 12 925951 937449

Neighbor

gene id symbol gene type direction distance location
cxxc4 cxxc4 coding downstream 54598 838511 ~ 871353 (-)
cdkn2a/b LOC108263810 coding downstream 170144 746338 ~ 755807 (-)
ints12 ints12 coding upstream 127938 1065387 ~ 1069815 (-)
anp32b anp32b coding upstream 208680 1146129 ~ 1153350 (-)
snapc3 snapc3 coding upstream 872701 1810150 ~ 1820845 (-)
si:ch211-113e8.11 LOC108263804 coding upstream 956137 1893586 ~ 1895099 (-)
ccdc149b ccdc149b,LOC108263252,LOC107550975,LOC105908379 coding upstream 1009926 1947375 ~ 1964907 (-)
G39312 tet2,LOC108414712 non-coding downstream 425 921127 ~ 925526 (-)
G39306 NA non-coding downstream 18117 903998 ~ 907834 (-)
G39303 NA non-coding downstream 18543 901948 ~ 907408 (-)
G39304 NA non-coding downstream 20080 902120 ~ 905871 (-)
G39293 NA non-coding downstream 70349 854882 ~ 855602 (-)
G39313 NA non-coding upstream 16450 953899 ~ 954107 (-)
G39323 NA non-coding upstream 55509 992958 ~ 993255 (-)
G39348 NA non-coding upstream 108794 1046243 ~ 1046753 (-)
G39346 NA non-coding upstream 146990 1084439 ~ 1085453 (-)
G39359 NA non-coding upstream 213697 1151146 ~ 1194477 (-)
G38400 NA other downstream 610423 314981 ~ 315528 (-)
LOC117596825 LOC108263784,LOC108261164,LOC108261316,LOC108263779 other downstream 658136 221729 ~ 267815 (-)
LOC113524614 NA other upstream 67028 1004477 ~ 1007050 (-)
cntln cntln,LOC108263774 other upstream 332996 1270445 ~ 1369012 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 934484 1871933 ~ 1877583 (-)
lgi2b LOC108263253,LOC108411628 other upstream 1032314 1969763 ~ 1979549 (-)
G39720 NA other upstream 1235909 2173358 ~ 2173751 (-)

Expression


Co-expression Network