cdkn2a/b (LOC108263810)



Basic Information


Item Value
gene id cdkn2a/b
gene name LOC108263810
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 746338 ~ 755807 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026910954.2
agagagagagagagagagagagagagaataaagacatCTACCGGAGAATTACCGGATTATTCTGCACgcgacgacacacacacacacacacacacacacacacacatgcagtgtgtttaatataatataatataatataatataatttaacacACAGCGATGCGCCTGGTGTAAAGTCCTCGCGCGCACACTGTGTCTGTGGCTTACCTGTCACACAGCACGCAGTCCGGGCTCGCGCACAGGTGAGAGCAGGTGAGGTGAGAGGATGCGCGCGGCCGAAGAGGACAGACTGGCGAATGAGCTCACGAGCGCGGCGGCGGCCGGAGACACGGAGCGCGCTGAGCTCCTGCTGCAGAACGGAGCGGAGATCAACCGCGCGAACCGCTTCGGGAGAACACCTGTACAGgtgatgaTGATGGGCAGTGTGAGCATGGCCAGCCTCCTGCTGTCACATGGTGCGAACCCGAACATGGCGGATGTGAGTACGGGGGTGACGCCGCTACACGACGCCGCGCGCGAGGGTTTCCTCCTCACCGTGCAGCTGCTGGTCAGAGCCGGAGCTGACGTCACGGCGCTGGACTCCAGGGGGCGGAGCCCGGCCCAGCACGCACTGCAGGCTGGCCACGCCCACATCGCCAAGTACTTACACACCCTCTAATCCTCCCCtgctctcgcgctctctctcacacacacacacacacacacacacacacacacacttcctcttcaTACAGGAAGTGTTAGCAAAGCGGCTTTATTTACTGTTGTTATAATTAACTTTAATAACatgtaataatgtttataaactGCTTATAAACATGCTGATGACACTGAAGGcactttacacattttctttattttattaaactttattaatgtcatgtgtgtgtttaatactaCGATGTATCGTAGATCTGATTATTAATGTTTCTGTGCTGGAACACTGAAATATGAACctgattattaaataaagacgaaataacagaatatttaagtaaataaataaataaataaataaaggagatAATTCTTCAGCATGTTTGTATTCATTCAGCTTTGTGTCCTTTCTGCTGTGCTGATTTAAATCTAGATACATATCAAGTGTTAA

Function


NR:

description
PREDICTED: cyclin-dependent kinase 4 inhibitor B-like

GO: NA

KEGG:

id description
K04685 CDKN2B, P15, INK4B; cyclin-dependent kinase inhibitor 2B

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026910954.2 True 1108 mRNA 0.48 2 746338 755807

Neighbor


gene id symbol gene type direction distance location
cxxc4 cxxc4 coding upstream 82704 838511 ~ 871353 (-)
ppa2 ppa2,LOC108414713 coding upstream 170144 925951 ~ 937449 (-)
ints12 ints12 coding upstream 309580 1065387 ~ 1069815 (-)
anp32b anp32b coding upstream 390322 1146129 ~ 1153350 (-)
snapc3 snapc3 coding upstream 1054343 1810150 ~ 1820845 (-)
G38494 LOC108263789 non-coding downstream 1340 722152 ~ 744998 (-)
G38496 NA non-coding downstream 17522 723474 ~ 728816 (-)
G38480 NA non-coding downstream 37233 708051 ~ 709105 (-)
G38476 NA non-coding downstream 40002 705979 ~ 706336 (-)
G38467 NA non-coding downstream 49335 691147 ~ 697003 (-)
G39293 NA non-coding upstream 99075 854882 ~ 855602 (-)
G39303 NA non-coding upstream 146141 901948 ~ 907408 (-)
G39304 NA non-coding upstream 146313 902120 ~ 905871 (-)
G39306 NA non-coding upstream 148191 903998 ~ 907834 (-)
G39312 tet2,LOC108414712 non-coding upstream 165320 921127 ~ 925526 (-)
G38400 NA other downstream 430810 314981 ~ 315528 (-)
LOC117596825 LOC108263784,LOC108261164,LOC108261316,LOC108263779 other downstream 478523 221729 ~ 267815 (-)
LOC113524614 NA other upstream 248670 1004477 ~ 1007050 (-)
cntln cntln,LOC108263774 other upstream 514638 1270445 ~ 1369012 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 1116126 1871933 ~ 1877583 (-)
lgi2b LOC108263253,LOC108411628 other upstream 1213956 1969763 ~ 1979549 (-)
G39720 NA other upstream 1417551 2173358 ~ 2173751 (-)

Expression



Co-expression Network