LOC113524625 (LOC108263780)


Basic Information

Item Value
gene id LOC113524625
gene name LOC108263780
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1017394 ~ 1025345 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910956.2
atgacagaagaagaagaagagctgagGGCTTCTCTCAGTGACCAAATCACCTTTTCTAAATATGTGgatgtatttgttttataacaaaTATGTTTTATCTGCTCGAGTGTAGAATAAAAgctaattagtgtgtgtgtgtgtgtgtgtgtgtgtaggttcaCTTCGTTCTGCTTTAAAGCCTGAGAATCGCAACTTGTACACCTCATGATGGAGTCGGGAAGGGCCAGGCAGCACTCTTTCACAAAACCTCCTCACACttttcctgctcctgctcctgctcctgcgcGTTCACAGGTAAAGGTTAGCCAGatttgtaaaaatgtgaagACAGAATCTTGTACAGCTTTGGAGAGCTTTGGAGAGACATCAGACATCAAAATATTACAGAAGACGGTTCTGGAAGCGCAAGAACTTAACTATGAAGACTATCTCTACTGTGAGGAATGCAGATCTTTCTTCTTCAACAAATGTGAGGTTCATGGTCCGGCTCTTTTCGTCCCTGATACCGCCGTTCCCATGGGGGTAGCTGACCGAGCCAGACAAACCCTTCCGCCTGGTTTAGAGATTCGGAAGTCTGGGATTCCTGACGCAGGCCTGGGTGTGTTTAATCAGGGAGAGCCTGTTGCTGTTGGTGCGCACTTCGGGCCGTATCAGGGAGACGTTGTGAACAAAGAGGAAGCTATGAACAGTGGCTACTCTTGGGTGATATACAAGGGCAGGAAGTGCGAGGAGTACGTTGACGCCAAGAGACAAATGAACGCTAACTGGATGCGTTATGTAAATTGCGCTTGCAATGACGAAGAGAAGAATCTTGTTGCGTTCCAGTACCAAGGAGGGATTTTCTACCGGTGCTGCCGATCCATCAAACCCGGAACGGAGCTCTTGGTGTGGTACGAAGAGGATTACGCCAAAGATCTCGGCCTTACGTTCGACTACCTTTGGAACATAAAGTGTTCCCCAAATGGAATGAACAAGGCCCTGTTGCAAGTCTTCTCCTGCTCCTTGTGTCCACTATCCTATAAATCTCTAATTTacctccacaaacacaccaggAGATGCCACTATGAGGAATATGTAACATTaacagaaaaaggagaaaataaatatgagaATCTGATTTCCACACAAATCTCAAGTAGTCAGCAAACATCCTGTGGTTCTGTCGCTACAAAGACCTCTAGacaaaagcagaaaagaaaTCACGACTGTAAAGATTGTGGGATGAGTTTTAATGACGGAAGTAATCTCAGAAagcaccagcgcattcacacaggagagaaaccttatcactgttcacagtgtggaaagagtttccGTCATCACAGCACTCTTCAACGACATCAACGCATCCACACGGGAGAGAAGCCgcatcactgctcacagtgcgGGAAGAGCTTTGCGCAAATGGGTCATCTCCAACGACACCAGCGCatccacacaggagagaaacctTACTCCTGTCCACaatgtgggaagagttttacctATAGAGATAATCTAAAAATGCACCAACGCATTCACACAAGAGAGAATGtatatcactgctcacagtgtgggaagattTTCAATCACCAGAGTAATCTCCAGCAGCACCAGCGCGTTCACACAGGAGACAAACCTTTTCACTGTTCAGAGTGCGGGAAGAGCTTTCGGCACCAGAGTCATTTCCAGACGCACCAGCGCACTCACCGAGGAGAGAGGCCTTATAAGTGTGcgcagtgtgggaagagttttgctCAGCACAGTTATCTCCGACAACACCATCGTATTCACACGAGGGAAAAGCCCTATTCCTGCTCTTTGTGCGGGGTGAGTTTTACGCAACAGGGTCACCTCCGAAcgcaccagcgcattcacacaggtgACAAACCGTATCACTGTTCActgtgtgggaagagttttactcgCCAGAGTTCTCTCCAGCAGCACCAAcatattcacacaggagagaagccttACCACTGCTCACAGtgcgggaagagttttactcgGCATAGCACTCTACAGTACCACCGCCGCGTtcatacaggagagaagccgtatcaccaTACTTAAGAAAACAATACTGAAGCCAAAGTGCCAGAGTTATCAATGAAGAACAAGGAAGCACTTCTCCAGCATTGAGCACTGAACCTAAACCATTAAGCAGTTGGAAAAATGTTACCTGGTGGGTCAAATCCAGATTACTTTTTGAATAGTACTTATGGAGGGATCAGGTTTTGGTGCAAGGAACATCATTCCATGGAGCTATCTTGTTTAGCATCAGTAGTCCAAGTGTGGTAGCAGGGTGATGGTGTGGGGAGTGTTCTCCTGGCACACATTGCACATCCTGACCAGAAATGACTATAAGAACATGGTTGCTGACCAAGTTCTTTCTTTCATGGCTATGGTTTATCCACACGCAGATGCTGCCAGCATGGGTCCAGGAAGATGACAGCaagtttttttattactttagtGGCCAGCACAGACTCAACTCTTCTTTAAGATGAGGTGAAATTCCAATTTTCAGAAACTGTGCAATGCTGTGCCACATGGTACAACATATCCAGACATATCTCTAAACAGCATGTGTAAAACGCATGTGCAGGAGAATCAATGCTCTTCTGAAAGCCAAAGGAGGTACAGCATGCTACAGTAGGCGTACCGAATTAACTGACAACAGCGCCATTTTGGGAAAACAAAAACCGTTGTTATGCAGTCAAGTCGAACGTTATCATTCCTTCTCATCACAGCCATTTGTTGAGCGAGAAACTAAATATAATGCATGGTTCCACTGAGATTCcagaaccttttcaggaaccttTTGGAACTGTCTTGACAGATGAACTGCAAAGTCCTGGACTCTGGTTTCTCTTAAGCGTTTCCACTACAC
>XM_026910957.2
atgacagaagaagaagaagagctgagGGCTTCTCTCAGTGACCAAATCACCTTTTCTAAATATGTGgatgtatttgttttataacaaaTATGTTTTATCTGCTCGAGTGTAGAATAAAAgctaattagtgtgtgtgtgtgtgtgtgtgtgtgtaggttcaCTTCGTTCTGCTTTAAAGCCTGAGAATCGCAACTTGTACACCTCATGATGGAGTCGGGAAGGGCCAGGCAGCACTCTTTCACAAAACCTCCTCACACttttcctgctcctgctcctgctcctgcgcGTTCACAGatttgtaaaaatgtgaagACAGAATCTTGTACAGCTTTGGAGAGCTTTGGAGAGACATCAGACATCAAAATATTACAGAAGACGGTTCTGGAAGCGCAAGAACTTAACTATGAAGACTATCTCTACTGTGAGGAATGCAGATCTTTCTTCTTCAACAAATGTGAGGTTCATGGTCCGGCTCTTTTCGTCCCTGATACCGCCGTTCCCATGGGGGTAGCTGACCGAGCCAGACAAACCCTTCCGCCTGGTTTAGAGATTCGGAAGTCTGGGATTCCTGACGCAGGCCTGGGTGTGTTTAATCAGGGAGAGCCTGTTGCTGTTGGTGCGCACTTCGGGCCGTATCAGGGAGACGTTGTGAACAAAGAGGAAGCTATGAACAGTGGCTACTCTTGGGTGATATACAAGGGCAGGAAGTGCGAGGAGTACGTTGACGCCAAGAGACAAATGAACGCTAACTGGATGCGTTATGTAAATTGCGCTTGCAATGACGAAGAGAAGAATCTTGTTGCGTTCCAGTACCAAGGAGGGATTTTCTACCGGTGCTGCCGATCCATCAAACCCGGAACGGAGCTCTTGGTGTGGTACGAAGAGGATTACGCCAAAGATCTCGGCCTTACGTTCGACTACCTTTGGAACATAAAGTGTTCCCCAAATGGAATGAACAAGGCCCTGTTGCAAGTCTTCTCCTGCTCCTTGTGTCCACTATCCTATAAATCTCTAATTTacctccacaaacacaccaggAGATGCCACTATGAGGAATATGTAACATTaacagaaaaaggagaaaataaatatgagaATCTGATTTCCACACAAATCTCAAGTAGTCAGCAAACATCCTGTGGTTCTGTCGCTACAAAGACCTCTAGacaaaagcagaaaagaaaTCACGACTGTAAAGATTGTGGGATGAGTTTTAATGACGGAAGTAATCTCAGAAagcaccagcgcattcacacaggagagaaaccttatcactgttcacagtgtggaaagagtttccGTCATCACAGCACTCTTCAACGACATCAACGCATCCACACGGGAGAGAAGCCgcatcactgctcacagtgcgGGAAGAGCTTTGCGCAAATGGGTCATCTCCAACGACACCAGCGCatccacacaggagagaaacctTACTCCTGTCCACaatgtgggaagagttttacctATAGAGATAATCTAAAAATGCACCAACGCATTCACACAAGAGAGAATGtatatcactgctcacagtgtgggaagattTTCAATCACCAGAGTAATCTCCAGCAGCACCAGCGCGTTCACACAGGAGACAAACCTTTTCACTGTTCAGAGTGCGGGAAGAGCTTTCGGCACCAGAGTCATTTCCAGACGCACCAGCGCACTCACCGAGGAGAGAGGCCTTATAAGTGTGcgcagtgtgggaagagttttgctCAGCACAGTTATCTCCGACAACACCATCGTATTCACACGAGGGAAAAGCCCTATTCCTGCTCTTTGTGCGGGGTGAGTTTTACGCAACAGGGTCACCTCCGAAcgcaccagcgcattcacacaggtgACAAACCGTATCACTGTTCActgtgtgggaagagttttactcgCCAGAGTTCTCTCCAGCAGCACCAAcatattcacacaggagagaagccttACCACTGCTCACAGtgcgggaagagttttactcgGCATAGCACTCTACAGTACCACCGCCGCGTtcatacaggagagaagccgtatcaccaTACTTAAGAAAACAATACTGAAGCCAAAGTGCCAGAGTTATCAATGAAGAACAAGGAAGCACTTCTCCAGCATTGAGCACTGAACCTAAACCATTAAGCAGTTGGAAAAATGTTACCTGGTGGGTCAAATCCAGATTACTTTTTGAATAGTACTTATGGAGGGATCAGGTTTTGGTGCAAGGAACATCATTCCATGGAGCTATCTTGTTTAGCATCAGTAGTCCAAGTGTGGTAGCAGGGTGATGGTGTGGGGAGTGTTCTCCTGGCACACATTGCACATCCTGACCAGAAATGACTATAAGAACATGGTTGCTGACCAAGTTCTTTCTTTCATGGCTATGGTTTATCCACACGCAGATGCTGCCAGCATGGGTCCAGGAAGATGACAGCaagtttttttattactttagtGGCCAGCACAGACTCAACTCTTCTTTAAGATGAGGTGAAATTCCAATTTTCAGAAACTGTGCAATGCTGTGCCACATGGTACAACATATCCAGACATATCTCTAAACAGCATGTGTAAAACGCATGTGCAGGAGAATCAATGCTCTTCTGAAAGCCAAAGGAGGTACAGCATGCTACAGTAGGCGTACCGAATTAACTGACAACAGCGCCATTTTGGGAAAACAAAAACCGTTGTTATGCAGTCAAGTCGAACGTTATCATTCCTTCTCATCACAGCCATTTGTTGAGCGAGAAACTAAATATAATGCATGGTTCCACTGAGATTCcagaaccttttcaggaaccttTTGGAACTGTCTTGACAGATGAACTGCAAAGTCCTGGACTCTGGTTTCTCTTAAGCGTTTCCACTACAC
>XM_026910958.2
AAACCTCCTCACACttttcctgctcctgctcctgctcctgcgcGTTCACAGGTAAAGGTTAGCCAGGTGTGTGACGGTTCTCTTTCACCTCTCCTCAGGAAGGTGAAGGTTTATGatttgtaaaaatgtgaagACAGAATCTTGTACAGCTTTGGAGAGCTTTGGAGAGACATCAGACATCAAAATATTACAGAAGACGGTTCTGGAAGCGCAAGAACTTAACTATGAAGACTATCTCTACTGTGAGGAATGCAGATCTTTCTTCTTCAACAAATGTGAGGTTCATGGTCCGGCTCTTTTCGTCCCTGATACCGCCGTTCCCATGGGGGTAGCTGACCGAGCCAGACAAACCCTTCCGCCTGGTTTAGAGATTCGGAAGTCTGGGATTCCTGACGCAGGCCTGGGTGTGTTTAATCAGGGAGAGCCTGTTGCTGTTGGTGCGCACTTCGGGCCGTATCAGGGAGACGTTGTGAACAAAGAGGAAGCTATGAACAGTGGCTACTCTTGGGTGATATACAAGGGCAGGAAGTGCGAGGAGTACGTTGACGCCAAGAGACAAATGAACGCTAACTGGATGCGTTATGTAAATTGCGCTTGCAATGACGAAGAGAAGAATCTTGTTGCGTTCCAGTACCAAGGAGGGATTTTCTACCGGTGCTGCCGATCCATCAAACCCGGAACGGAGCTCTTGGTGTGGTACGAAGAGGATTACGCCAAAGATCTCGGCCTTACGTTCGACTACCTTTGGAACATAAAGTGTTCCCCAAATGGAATGAACAAGGCCCTGTTGCAAGTCTTCTCCTGCTCCTTGTGTCCACTATCCTATAAATCTCTAATTTacctccacaaacacaccaggAGATGCCACTATGAGGAATATGTAACATTaacagaaaaaggagaaaataaatatgagaATCTGATTTCCACACAAATCTCAAGTAGTCAGCAAACATCCTGTGGTTCTGTCGCTACAAAGACCTCTAGacaaaagcagaaaagaaaTCACGACTGTAAAGATTGTGGGATGAGTTTTAATGACGGAAGTAATCTCAGAAagcaccagcgcattcacacaggagagaaaccttatcactgttcacagtgtggaaagagtttccGTCATCACAGCACTCTTCAACGACATCAACGCATCCACACGGGAGAGAAGCCgcatcactgctcacagtgcgGGAAGAGCTTTGCGCAAATGGGTCATCTCCAACGACACCAGCGCatccacacaggagagaaacctTACTCCTGTCCACaatgtgggaagagttttacctATAGAGATAATCTAAAAATGCACCAACGCATTCACACAAGAGAGAATGtatatcactgctcacagtgtgggaagattTTCAATCACCAGAGTAATCTCCAGCAGCACCAGCGCGTTCACACAGGAGACAAACCTTTTCACTGTTCAGAGTGCGGGAAGAGCTTTCGGCACCAGAGTCATTTCCAGACGCACCAGCGCACTCACCGAGGAGAGAGGCCTTATAAGTGTGcgcagtgtgggaagagttttgctCAGCACAGTTATCTCCGACAACACCATCGTATTCACACGAGGGAAAAGCCCTATTCCTGCTCTTTGTGCGGGGTGAGTTTTACGCAACAGGGTCACCTCCGAAcgcaccagcgcattcacacaggtgACAAACCGTATCACTGTTCActgtgtgggaagagttttactcgCCAGAGTTCTCTCCAGCAGCACCAAcatattcacacaggagagaagccttACCACTGCTCACAGtgcgggaagagttttactcgGCATAGCACTCTACAGTACCACCGCCGCGTtcatacaggagagaagccgtatcaccaTACTTAAGAAAACAATACTGAAGCCAAAGTGCCAGAGTTATCAATGAAGAACAAGGAAGCACTTCTCCAGCATTGAGCACTGAACCTAAACCATTAAGCAGTTGGAAAAATGTTACCTGGTGGGTCAAATCCAGATTACTTTTTGAATAGTACTTATGGAGGGATCAGGTTTTGGTGCAAGGAACATCATTCCATGGAGCTATCTTGTTTAGCATCAGTAGTCCAAGTGTGGTAGCAGGGTGATGGTGTGGGGAGTGTTCTCCTGGCACACATTGCACATCCTGACCAGAAATGACTATAAGAACATGGTTGCTGACCAAGTTCTTTCTTTCATGGCTATGGTTTATCCACACGCAGATGCTGCCAGCATGGGTCCAGGAAGATGACAGCaagtttttttattactttagtGGCCAGCACAGACTCAACTCTTCTTTAAGATGAGGTGAAATTCCAATTTTCAGAAACTGTGCAATGCTGTGCCACATGGTACAACATATCCAGACATATCTCTAAACAGCATGTGTAAAACGCATGTGCAGGAGAATCAATGCTCTTCTGAAAGCCAAAGGAGGTACAGCATGCTACAGTAGGCGTACCGAATTAACTGACAACAGCGCCATTTTGGGAAAACAAAAACCGTTGTTATGCAGTCAAGTCGAACGTTATCATTCCTTCTCATCACAGCCATTTGTTGAGCGAGAAACTAAATATAATGCATGGTTCCACTGAGATTCcagaaccttttcaggaaccttTTGGAACTGTCTTGACAGATGAACTGCAAAGTCCTGGACTCTGGTTTCTCTTAAGCGTTTCCACTACAC

Function

NR:

description
PREDICTED: histone-lysine N-methyltransferase PRDM9-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910956.2 True 2875 mRNA 0.46 7 1017394 1025345
XM_026910957.2 False 2860 mRNA 0.46 7 1017394 1025345
XM_026910958.2 False 2681 mRNA 0.46 6 1018935 1025345

Neighbor

gene id symbol gene type direction distance location
LOC117596917 NA coding upstream 28590 985548 ~ 988804 (+)
LOC113525488 NA coding upstream 314827 698177 ~ 702567 (+)
LOC117596906 NA coding upstream 327891 689114 ~ 689503 (+)
LOC113525487 NA coding upstream 328608 669887 ~ 688786 (+)
LOC113525482 NA coding upstream 384864 625093 ~ 632530 (+)
arhgef38 arhgef38 coding downstream 13330 1038675 ~ 1061874 (+)
uso1 uso1 coding downstream 47392 1072737 ~ 1094921 (+)
hemgn NA coding downstream 137274 1162619 ~ 1165369 (+)
LOC113524617 NA coding downstream 146540 1171885 ~ 1176844 (+)
spag5 spag5 coding downstream 154133 1179478 ~ 1191246 (+)
G38571 NA non-coding upstream 24099 993009 ~ 993295 (+)
G38570 NA non-coding upstream 24794 992241 ~ 992600 (+)
G38566 NA non-coding upstream 41699 975350 ~ 975695 (+)
G38564 NA non-coding upstream 47044 970143 ~ 970350 (+)
G38563 NA non-coding upstream 57716 959420 ~ 959678 (+)
G38582 NA non-coding downstream 20898 1046243 ~ 1049429 (+)
G38585 NA non-coding downstream 42902 1068247 ~ 1069317 (+)
G38589 anp32b,an32b,LOC106602331,LOC106602332,LOC106610273 non-coding downstream 93949 1119294 ~ 1153326 (+)
G38593 NA non-coding downstream 111319 1136664 ~ 1137026 (+)
G38596 NA non-coding downstream 133081 1158426 ~ 1159328 (+)
mtap mtap,LOC108263789 other upstream 272395 722127 ~ 744999 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 803665 200601 ~ 213729 (+)
G38577 NA other downstream 38627 1063972 ~ 1065331 (+)
coro2a coro2a other downstream 77433 1102778 ~ 1141934 (+)
trmo trmo other downstream 140500 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 168874 1194219 ~ 1224601 (+)
cdk2ap2 cdk2ap2 other downstream 958302 1983647 ~ 1997265 (+)

Expression


Co-expression Network