LOC113524707 (LOC108263800)


Basic Information

Item Value
gene id LOC113524707
gene name LOC108263800
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1864215 ~ 1872988 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911037.2
gcggggcttatgGCTATCATATAAGCGTGCGTTCAGCCTCCAGAGGTTAATGTACGATGGCGAGCCAGCGTGAAGATCAAGCTCCAGGTCAGGTCGAGACAGATCATGGCCCAACTCAGCGTGTTACTACTGCAGGGCAGGAAGGAGGCCGGATAGAGACAGACGCTGCATATCGAAGCAACATTGACCCGAATGAGGAGTACAACATGAATCACAAACGCAGAGGTCTGGCTCTCATCTTTAACCAGGAGGACTTTTACTGGCAACTCACGTTGCACTCTCGAGGCGGAACCAATGCAGACAGGGACAACCTGAAAAGAAGGTTTGAGCAGCTGGAATTTGAGGTGAGGGCTTACAATAATAAGAAACGGGAAGAGATTCTGCACATCATCACTGAAGCTGCAAACGCTAATCACGCAGACGCTGACTGCTTTGTGTGCGTGTTCCTGAGCCACGGGGAAAACGGACACGTTTACGCCTACGACGACAAGATCGAGATCCAGGACATGACGGCTCTGTTCAGAGGAGACAATTGTCCGAGTCTGGTGGGGAAACCAAAGATCTTCATCctgcagGCGTGTCGTGGGGACAAACACGATGATCCGGTCACTCCCATGGACGTGGTGGACAGCGAGGAGGTCAATCAGGTGGTGGTGGACGCTGGTGTGCTTCAGACCCTCCCTGCAGGAGCCGACTTCATCATGTGCTACTCTGTAGCTGAGGGTTTCTACTCACACAGGGAGACACTGAACGGTTCCTGGTTTGTTCAGGACCTGTGTGAGCTGCTGCACCAGTACGGCTCCAGGCTGGAGTTCACCGAGCTGCTCACACTCGTCAACCGCAAAGTGTCTCATCGCAGTGTGGGGAGGTGCAAAGACCTCTCAGCAATCGGCAAGAAACAGGTGCCCTGCTTCGCCTCCATGCTCACCAAGAAGCTTTACTTCAGGTCCAAGCGAGGAAACTACGTGTAGACACTctcgtccacacacacacacacacacacacacacacgcacagtcaGGGATTCTGATTTATCTTTCACCTTAAAGCCATGATGGAGTTTATACAGCAGGAGATAGAGGTGCAGATGAACAGCCGCAATGTTTACAAAAGCTCACGGGGTTTACAAAAATTATATTCACACTCGGACTCATGGGagattttctttcttaaagCTCTACTAGGGAACCAATGAGAATAATTTGTTATGGAAGGGAACCAATGAAAATATAGGGCTGTATCAGGGGACCAATGAAATAGAGGGTTATCTCAGGGAATTAATGAAAACAAGGCTTTGTTGGGAAACCAGTGAAAATCGGTGGTTATGCAAGGTAACTAATAACAAATGcaggaaatgaataaaaataaagggtTAGGTTGGGGAACCAGGAAAAATGGTGCATTATCTCAAGCTTCCATGGAAAATGGATGATTGTCCAGAAACCAATCTAACTAGGGCAGTTCTGTGAAAAAGGAACCTTATGTAGAACCTTATATCAGGAAACCAGTAACATAGGATTATATTAGGGAACCAATGAAAATGGAGGGTTGACTAAAGGGGACCAATGAAAATAGAGAGTTATTTAAGGGGACCAATGAAAATAGAGGGTTATCTAAAGGGGACCAATGAAAATAGAGAACTATCTACAGAGGACCAATGAAAATAGAGGACTATCTAAAGGGGACCAATGAAAATAGAGGGTTATCTAAAGGGGACCAATGAAAATGGAGGGTTATCTAAAGGGGACCAATGAAAATGGAGGGTTATCTAAAGGGGACCAATGAA

Function

NR:

description
PREDICTED: caspase-6-like

GO: NA

KEGG:

id description
K04396 CASP6; caspase 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911037.2 True 1786 mRNA 0.47 8 1864215 1872988

Neighbor

gene id symbol gene type direction distance location
LOC113524724 LOC104953273 coding upstream 3415 1856521 ~ 1860800 (+)
LOC117596857 pla2g12a,LOC108263807 coding upstream 10783 1848225 ~ 1853432 (+)
dnajb14 dnajb14 coding upstream 16802 1822256 ~ 1847413 (+)
psip1a psip1,LOC108262878,LOC108439950,LOC106610301 coding upstream 57664 1784540 ~ 1806551 (+)
bnc2 bnc2,LOC107595060 coding upstream 280293 1394197 ~ 1583922 (+)
si:ch211-113e8.10 zfp91,LOC107674257,LOC107737094 coding downstream 8342 1881330 ~ 1891816 (+)
cntf NA coding downstream 25803 1898791 ~ 1907652 (+)
si:dkey-117m1.4 si:dkey-117m1.4,LOC108263251,LOC108434122,LOC107559642,LOC107748830,LOC107671095 coding downstream 47174 1920162 ~ 1939926 (+)
ing2 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107737097,LOC107684977 coding downstream 141960 2014948 ~ 2018960 (+)
tmem134 tmem134,LOC107737124 coding downstream 236080 2109068 ~ 2118767 (+)
G38721 NA non-coding upstream 50206 1806634 ~ 1814009 (+)
G38709 NA non-coding upstream 99862 1763871 ~ 1764353 (+)
G38687 NA non-coding upstream 342961 1498168 ~ 1521254 (+)
G38681 NA non-coding upstream 385076 1478557 ~ 1479139 (+)
G38676 NA non-coding upstream 399778 1462462 ~ 1464437 (+)
G38758 NA non-coding downstream 48850 1921838 ~ 1975630 (+)
G38759 NA non-coding downstream 52336 1925324 ~ 1928330 (+)
G38756 NA non-coding downstream 66992 1939980 ~ 1941750 (+)
G38761 NA non-coding downstream 68857 1941845 ~ 1966544 (+)
G38796 NA non-coding downstream 182663 2055651 ~ 2056825 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 639614 1194219 ~ 1224601 (+)
trmo trmo other upstream 675621 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 722281 1102778 ~ 1141934 (+)
G38577 NA other upstream 798884 1063972 ~ 1065331 (+)
mtap mtap,LOC108263789 other upstream 1119216 722127 ~ 744999 (+)
cdk2ap2 cdk2ap2 other downstream 110659 1983647 ~ 1997265 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other downstream 152500 2025488 ~ 2091343 (+)
LOC113545357 NA other downstream 1958879 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 2791328 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 3390594 5263582 ~ 5357860 (+)

Expression


Co-expression Network