LOC113537521 (abhd12)


Basic Information

Item Value
gene id LOC113537521
gene name abhd12
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10816842 ~ 10824656 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932039.2
ttcaaaattaaaaacaaagtttTCATTTCGTTTTCAATGAACCTGAAAAGCGCGAGCAAGGTTCGCTAACTGTCTACCGTAAAGGCTGATGTATACGCAGACCAACATTTTAAAGAGTGGGTAAGCGGAGCTGACTTTTCCGGAATTCAGGCAACGTAACCGCAGTGTTTATCTACGGCAGTGGGCGGTTTCAGACGTAGCCAAATTGTTCAAAGTCCCAAGACTTTATCAAGACAGCAGCTGTCACTGTCCAACACAGCAAGTAGAAATTCATCTAGCTAAAGTAGTGTGCAGTAAAGGAAGCGCTGGTCTCTTACTCTCCTACCCTACTGAAGGTGTGCTTCACTGTTTTATATCTATTCCGAGATGAGAAGAAGAGTTGATGAAACTGCTGCATCCAAACGAACTGAGGAGAAACCAGTGAAAAGCGAAACTGTTAAAGTGCAAGCCAGgtcATCATGGTGGGTGTGGGTGAAAAGGGGACTGATAGCCCTCTGCACTCTGTATGTGGCCACACCGTTTGTTCTGCGATTCTTTCCCGGTGTCATACAGTACCTGGTTTATAAACATGCCAtaacaTATTTCGTTGACCTGAGGCGTCCCTCTGATCTTGGCCTCAATCACACCGTCAATATGTACCTGACTTCAGAAGCAGGAGTGACACTGGGAGTATGGCACACGGTTCCTGAGCAAAAGTGGAAGGAGGCTCAAGGTAAAAGTTTGGAGTGGTATGAGCAGTCTTTGGGGGATGGTTCCCCTGTTTTCATCTACCTCCATGGCAATACGGGCAACAGagcAGCTCCACATCGTTTGGGAGTTGCCAATGTGTTAAGTGCTCTTGGCTATCATGCCGTGGTTATGGATTACAGAGGATTTGGGGATTCCACCGGAGAGCCCACTGAGGATGGACTGACCACCGATGCACTTTATCTGTACCACTGGGTACGGGCACGCAGCAAGGGCAGTCTGGTCATCATATGGGGTCACTCCCTTGGCACAGGAGTGGCAACTAACACTGCAGTGAAAGTACAGGAGCAAGGAAACCCCCCTGATGCAGTGATACTTGAAGGTGCTTTCACAGACATAAAAATGCCAGAAGGATTCCCCCATCCTTTCACCTGGtattACTGGAGATTTCCATACATACAGTACTACTTTTCCCAGGACTcaattaaagcaaataaatttGTATTACCCAATGTTCAAAACTTGAAAAAAATGAGGACGCCTCTTATGATCCTTCATTCTAAAGATGACCACATGACTCCTTTCAGGATGGCTGAGGAGATTTACAGCATTGCTAAAAGTGTGCTGAAGTCAGAGGAAAAAGTCAGACTGGTTGCCTTTGATGGATCCCATGGATATCTTCATAATGGACTTTATAGGGATCCTGGTTTGCCAAATTTTATAAGGGAGTTTGTGCAGTCTGTTGCAAAGTAATCTGAAGGTGGACCAAGTTGAACCTACACGTTTTATCTTCACATATACGTTTTATTCTCCCATGTTAACTTTAGTGATGTGTGCTTGCAGTTCAGTTTCGTTAAAAGTCATTCCTCTTCTGAGCTTATGTTAAATTCAGTagacacctctctctctctctctctctctctctcccacttgctctctcactcacacacacacacacacacacacaatttataaaTTCCAGAGATACATTATGCATATCATGGATTGCACATATATTATGACAACTTTCATATAATAAACAGTGCATTTGAATTCTAGCTATCAGATGTAATTATGTGTAAAGGAGTAGTCTTGAAGCACTCTTAAACATCACAAATTATATCTTTACGACAATGCCTTGTAAtatcatgattattattttataaatgctaaaaggaatttattaataaagacCCTGATTATAATGTGATAAATAATAGTGCTGTTGAAAGAAATGTACAGATAGTTTgtattgtaaattaaaaatatccaTAGGATCTAAGAAGatcctgatgatgatgatgatgatgtgtacAAAGAATAAACATTAAAGTACCTGACTatg

Function

symbol description
abhd12 Predicted to enable acylglycerol lipase activity; lysophospholipase activity; and palmitoyl-(protein) hydrolase activity. Acts upstream of or within myelination; sensory system development; and swimming behavior. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in gill; gonad; liver; muscle; and nervous system. Used to study PHARC syndrome. Human ortholog(s) of this gene implicated in PHARC syndrome. Orthologous to human ABHD12 (abhydrolase domain containing 12, lysophospholipase).

NR:

description
PREDICTED: monoacylglycerol lipase ABHD12 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932039.2 True 2032 mRNA 0.42 13 10816842 10824656

Neighbor

gene id symbol gene type direction distance location
LOC113538283 abhd12 coding upstream 642 10802167 ~ 10816200 (+)
nanp nanp coding upstream 31194 10783106 ~ 10785648 (+)
LOC113542239 rmdn2,LOC107747293,LOC107665610 coding upstream 93085 10684500 ~ 10723757 (+)
dna2 dna2,LOC107743557,LOC108261390 coding upstream 228727 10573152 ~ 10588115 (+)
si:dkey-191g9.7 LOC108263628 coding upstream 266651 10542610 ~ 10550191 (+)
tm9sf3 tm9sf3,tm9s3 coding downstream 566 10825222 ~ 10844291 (+)
sfxn4 sfxn4 coding downstream 25079 10849735 ~ 10856137 (+)
ide ide,LOC107665588 coding downstream 41741 10866397 ~ 10894171 (+)
cpeb3 cpeb3 coding downstream 102664 10927320 ~ 10974673 (+)
LOC113537959 znf518a coding downstream 220250 11044906 ~ 11053251 (+)
G44060 opn3 non-coding upstream 201256 10615146 ~ 10615586 (+)
G44059 opn3,LOC106939390,LOC107676370,LOC106911851,LOC103148276,LOC107549142,LOC107665579 non-coding upstream 205036 10611479 ~ 10611806 (+)
G44044 NA non-coding upstream 256319 10558629 ~ 10560523 (+)
G44016 NA non-coding upstream 299956 10514337 ~ 10516886 (+)
LOC117596582 NA non-coding upstream 493578 10318421 ~ 10323264 (+)
G44182 NA non-coding downstream 150186 10974842 ~ 10978237 (+)
G44211 NA non-coding downstream 178504 11003160 ~ 11004990 (+)
G44222 NA non-coding downstream 228919 11053575 ~ 11053853 (+)
G44221 NA non-coding downstream 229422 11054078 ~ 11055854 (+)
G44398 NA non-coding downstream 472836 11297492 ~ 11297714 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 208138 10594574 ~ 10608704 (+)
sprn sprn other upstream 258547 10552259 ~ 10558295 (+)
trnak-cuu NA other upstream 2346961 8469624 ~ 8469881 (+)
G42685 NA other upstream 2350530 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 3145432 7649198 ~ 7671410 (+)
dntt dntt other downstream 274937 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 858208 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 882279 11706935 ~ 11707005 (+)
LOC113544122 NA other downstream 921092 11745748 ~ 11766414 (+)
trnay-gua NA other downstream 1811664 12636320 ~ 12636406 (+)

Expression


Co-expression Network