bag3 (bag3)


Basic Information

Item Value
gene id bag3
gene name bag3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13376724 ~ 13383343 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932061.2
TTTAAAGGACCCGAGTGCGCCGTCATGGCACAATATTCAAGACCGAGGCTGTATCAGAGTATGAAAACACTGTCTCCTGTTGAAACAATGGCTACCAATGATCCTCTGCCTCCAGGATGGGAGATTAAAATCGACCCTCAGACCGGATGGCCGTTTTTTGTGGATCACAACAATCGCATCACAACGTGGAACGACCCCCGGCACGACAGTAAGCGGGGCACTCAGCTTCCCCTCAACGGCCCCTGTGCATCTACAGATTCATCTCCTCAGGACATgcacaaggttttttttccgGAGATGAAACAGCCAAACCTACGTCAAGGCTATATCCCCATCCCAGTCACCCATGAAAATATCGAACCCAGGCAGCAACAGTATCCACCATTTTCTTATATGTATCCGACAAACCAGCAAAACCTAAGAGCAGATGGCCGGACTCCTTCCCCAACTCCCACACTGCACTGTCGACCAAGATCTCCAGTACAGGCCACGTCAGAGGCCGATTCACACTGCCTGTCCTGTTCACCTGCTTCACATGGACCTGAGGCCCACCATGTGCACCACTCGCCACAGGGGACACAATCTCATACCAACTCACATCATCAACCTTCCAGACCCAGCAGCACAGGCCTCCGGGCGGGCTATATTCCCATTCCTGTCATTCATGAGGGGACCGGAGGCAGCCCACAAACCCAGAATGTCCATCCTAAGCGCTTCTGGCAAACAGAATACCAACCCTCTGTTCACAGCCGCCAACCAGAAGAGTGGAGTCCTAGCCCTGCATTTTCCACAAGAGAAAAAGCTCCAACCTACCGTGAACAAGTGCCCATTCAGCTTGAGCAGAATCGCTCAGCTAGTCCTATCTTACTGCACAGCGTAAGGGCTCAGGAGCCAGTCAGAGCACAGGTCATGAGTGAGAGGCCACAGGTCCAGCAGCATGTTGTACATACAGAGATTCCTCCTAAGGTTGATCATCCTGTTGAACATCGTACCATCCACCCCATTGAGATTCCTATTCAGAGAGTGGCTGAACCACAGCAGCCTGTACCACATCCCATATCACCACTGGCACAGCATCCTATACTGGAACCCGAACAGGAACTTTTTCAGACCCCCATACAACAGTCTGTACGAGAGCCTGTGCAGACCCCTATACAACAGCCTGTGCGAGAGCCTGTGCAGACCCCCATACAACACCCTGTGCTATCTGAACAAGTGCCACCTCCAATGCCAGAGACCGCCAGTGCAGGTTCCATGCAGGTTCCAGCATCGCCAGAACCCCAGGAACCAGCAGGTCCACACCCGGAAATTCAACTTGAGGAGAAGGTGGAAGCAAGCTCAAGTCACCCAGGACTGGCAAAGGTACAGCAAATTTTGGAGCGGGTGGAGAAACTGGCCCAGGAAGTGAAAGGTTTTGACGGGAAAAAGAATGATAAAAGATATCTGACACTGGAGGAATTTTTGACCAAAGAACTGTTGGCTCTGGACTCGGTTGATCCAGAGGGACGTATAGATGTGCGTCAGGCCCGTCGCGATGGTGTCCGCAGAGTACAAACCATTCTTGAGGAACTGGAGACACTGGGTGAGCATTCAGAAGCACAGGTGAGCATCAGCAGCACTGAAGCTGAGAAAGGAGAGCCTAGTTTGATCAACCAGGCAGACATGGAGAAGGCCAAGGAGATATCATAACTGCAAACCAAAGTTCTAGTATGAAAGAGACACCAATCACATCTCCTCAGTCTGTTATTGGTTGCATGCacaattaatttaattgttcCGTTGGCTGACAGTTAATATGTGATTTGTTTGCTGAGTGCAGTTATGCGTGCTGTTATGTGATGGCGCTCTTGTGGAATTTTACTGTACAAGTGTCTTGTAGCAGGACCATAGTGGTGACCTTGTGGTGGCTAAGTTTCATCCTGAAACTCAGCCTCAAATAAGAGGCCTTTATTCAAATGaatgtgctttatttttgcTTCTACTTAGGACGAGTATCCGATGTTTGCCTTTAGTCTTTTCCATGTATGATGAAAAGCTTTTGAAATTCCAATGAGAATACCCACTGTTTCTTAGAAGGACActgattttattcattgattTTATAACAGCGGGCAAAGACAAACAATTAACACATATAAAAAGGGTcaagttttcacatgaaaaacaaacTCCTTATATAGCCTATATATTCTTTACatttggaaaacaaaaaactgatCAGATTAGCAGTGTTTTGACTATAATGTTGTGATCTTGATACTTGTCAACATCAGTGTTAATGGTTGAATGATATAGACAACAGTGTtatatttctattctatttttgtgccaaaatgaacatttttacatattttccagtGGTAAAAATGTCCTCCATCTCCATTAAAGTGTGTTCtcttaaaacacaaaatatacatGAATAATAAAAGACCTGAAAAGTA

Function

symbol description
bag3 Predicted to enable adenyl-nucleotide exchange factor activity; chaperone binding activity; and heat shock protein binding activity. Acts upstream of or within heart contraction; locomotory behavior; and skeletal muscle tissue development. Located in Z disc. Is expressed in fast muscle cell; heart; muscle; and slow muscle cell. Used to study dilated cardiomyopathy and muscular dystrophy. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1HH and myofibrillar myopathy 6. Orthologous to human BAG3 (BAG cochaperone 3).

NR:

description
BAG family molecular chaperone regulator 3-like

GO:

id name namespace
GO:0060047 heart contraction biological_process

KEGG:

id description
K09557 BAG3; BCL2-associated athanogene 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932061.2 True 2441 mRNA 0.46 4 13376724 13383343

Neighbor

gene id symbol gene type direction distance location
pkd2l1 LOC108263119 coding upstream 10657 13359076 ~ 13366067 (+)
atoh7 atoh7 coding upstream 20292 13353569 ~ 13356432 (+)
si:dkey-51a16.9 LOC108263124,LOC108426796,LOC107559326,LOC107655434 coding upstream 30618 13339258 ~ 13346106 (+)
LOC113543782 LOC108263125 coding upstream 38390 13333341 ~ 13338334 (+)
calhm1 LOC108263121,LOC108263394 coding upstream 43563 13329914 ~ 13333161 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding downstream 2143 13385486 ~ 13404675 (+)
sec23ip sec23ip,LOC107655440 coding downstream 36605 13419948 ~ 13430260 (+)
bcl11aa bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449 coding downstream 204973 13588316 ~ 13633478 (+)
fancl fancl,LOC107585345 coding downstream 652295 14035638 ~ 14056463 (+)
soul2 NA coding downstream 810491 14193834 ~ 14197074 (+)
G45640 NA non-coding upstream 725 13375799 ~ 13375999 (+)
G45594 NA non-coding upstream 63503 13312994 ~ 13313221 (+)
G45592 NA non-coding upstream 64644 13311677 ~ 13312080 (+)
G45508 NA non-coding upstream 280843 13095671 ~ 13095881 (+)
G45473 NA non-coding upstream 324195 13052240 ~ 13052529 (+)
G45712 NA non-coding downstream 138496 13521839 ~ 13599015 (+)
G45713 NA non-coding downstream 139563 13522906 ~ 13594825 (+)
LOC113545747 NA non-coding downstream 260777 13644120 ~ 13645338 (+)
LOC117596881 NA non-coding downstream 505936 13889279 ~ 13889849 (+)
G45875 NA non-coding downstream 510799 13894142 ~ 13896535 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 342374 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 371401 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 439422 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 733420 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 740318 12636320 ~ 12636406 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 114705 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 830026 14213369 ~ 14286542 (+)
cgas NA other downstream 978024 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 1589225 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 2410063 15793406 ~ 15797204 (+)

Expression


Co-expression Network