LOC113537563 (LOC108263692,LOC108422693)


Basic Information

Item Value
gene id LOC113537563
gene name LOC108263692,LOC108422693
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21967741 ~ 21970960 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932110.2
AGCGGGGTCCTCGCTCTTCTGGTGTGGGGTGAAGCAGAAGGAGAGTGGTGTGCTgtcatctttattttatatatacgtttatttgaaaatgtattacaaAATCAGCGGAGTGACAGGAAAGCTGACGGGATCTTCACCGGCGAGCGCATACTGCCCTCAGGGGCTGAAACCCAGCGTGCCCTCCCAACCCACCCCCATGGTCTTCGCCTTACCCACCAAGGTGGTGTCAGAAGCAGGACACACAGCTGAGTATATGGGATCTAACAAAGTCCCTGAGCTGCAAAAGCTCTTTCAGAAAGCTGATGGAGTGCCAATTCATCTGAAGCGTGGAGTCATTGACCGGCTACTGTACAGGACTACAATGGGCCTGACGATCGGAGGAACCTTGTATTGCTTAGTGGCCCTGTATTTTGCTGCTCAGCCCAAAAAAGCTGAATAACCTGAATAACCTTCCCTGTGGAACAATGAGATGGACCATTACAAGTGTATTCCCAAAGACAGTTGCATAATTGCTTTGGTTCTGCAATATTTTTTCACCTCCTATCAACCCTTAATTTATATGGCCCTCAAGAGGGTTTGGAATTACATGTTTTAGAAACAGGTCAAATAAGAAGCACCAGTTAAGAGCATCACTCCTCTGTGAATGACTTAATTCAGGGATATGGTGTAGTTGTAATACATTCTGTGTGTATAAGGTGCCATTTTAGGTTTGGGAGGCTGGTGCTTTGAACATAGGGATGTGTTACAAAACAAACCAAGCTTCCAGTTGGCTTATAATGCACAGGCGCTTGCAATGACAACAGACTGCAATgtgaaattatgaaataaatgggAACTGTGCCAGcaggtttgtgtgtttaaaaaaaaaaaaaaaaaaaaaaaaaattggacagGTTTTCTCTTGTTTTGTCGACTGGGGCATACACTTATAACATGCAGTTACGCAATCTCAGTCTCACTGAAGAACAAAATGTCCTTTTCAGGTGCTTCTGTGTTCACATGCTATTTACATGGCCATAAATCTGTAATCATGTGTAATTTGACTGTGAGTGACATTCTTGTCATTTTTcttgagaaaataaatatatcttgTTCATAAAAAGTTGAA

Function

NR:

description
PREDICTED: cytochrome c oxidase subunit 7A-related protein, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932110.2 True 1108 mRNA 0.42 3 21967741 21970960

Neighbor

gene id symbol gene type direction distance location
LOC113537982 kcng3,LOC107758134,LOC107756869,LOC107590001,LOC107586474 coding upstream 7342 21954905 ~ 21960399 (+)
hcar1-3 NA coding upstream 50073 21914549 ~ 21917668 (+)
haao haao,LOC107727361,LOC107699283,LOC107586504,LOC107590002,LOC107707146 coding upstream 62632 21899556 ~ 21905109 (+)
LOC113542474 zfp36l2 coding upstream 231208 21733757 ~ 21736533 (+)
thada thada,LOC104958480 coding upstream 235877 21645736 ~ 21731864 (+)
prph2b LOC108262942,LOC108422795,LOC103028857,LOC107578331,LOC107739477,LOC107586467,LOC107590000 coding downstream 273149 22244109 ~ 22265419 (+)
timm23b timm23a,LOC108263229,LOC107565600,LOC107690962,LOC108426535,LOC107561858 coding downstream 600411 22571371 ~ 22587644 (+)
yipf3 yipf3,LOC107696384 coding downstream 630596 22601556 ~ 22608030 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838 coding downstream 637519 22608479 ~ 22621693 (+)
dlk2 dlk2 coding downstream 725435 22696395 ~ 22720888 (+)
G50783 NA non-coding upstream 92726 21874813 ~ 21875015 (+)
G50772 NA non-coding upstream 98713 21868824 ~ 21869028 (+)
G50516 NA non-coding upstream 393688 21567415 ~ 21574053 (+)
LOC117596875 NA non-coding upstream 441674 21525437 ~ 21526067 (+)
G50528 NA non-coding upstream 449986 21516282 ~ 21517755 (+)
LOC113545609 NA non-coding downstream 33758 22004718 ~ 22015489 (+)
G50880 eml4 non-coding downstream 64522 22035482 ~ 22041152 (+)
LOC113544795 NA non-coding downstream 256485 22227445 ~ 22229448 (+)
G50936 NA non-coding downstream 280875 22251835 ~ 22252048 (+)
G50929 NA non-coding downstream 295737 22266697 ~ 22337044 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 848777 21025733 ~ 21118964 (+)
G49862 NA other upstream 1392262 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 1575140 20382346 ~ 20392601 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 2611643 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 2705653 19256064 ~ 19262088 (+)
wu:fj16a03 NA other downstream 49362 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 514350 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 813368 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 940184 22911144 ~ 22913552 (+)
G51562 NA other downstream 1483468 23454428 ~ 23455549 (+)

Expression


Co-expression Network