oprm1 (oprm1,LOC108262849,LOC108434947,LOC107743618)


Basic Information

Item Value
gene id oprm1
gene name oprm1,LOC108262849,LOC108434947,LOC107743618
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9244541 ~ 9268345 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932135.2
gaagCCCTCCTATCCATTTGTATGTTGTGTTACGCCGATAGGACAGGACGTATTGGCTAAGTGATCAGATAAAGTGGTGCACCGCGGTGTGCGCACGAGGCTCTCGCGCGTTTAGCTCGTTCAAGCAGCACGGACGCCGGCGCGCGCGCTGCTCTGAAGAGCGCATTGAACAGAACAGGTGtcgagaggagagagagagagagagacacacacacacacacacacacagagagagagagagagagagagaggtacacaACGCAACTCGAACCGAGTCCACTGAGAGCCATGGAGAGCGTGGTGAACATCTCAGCGCCTCTCTATCACCTCTCCCATCTGTCCAACCTCAGCGTCTTCTGCCCCAACTTGAGCTCCAGCGGTGGTGGGAACGCGACTCTGCTGGAGAACGGCATGTGTGAGCGACCCACCGACACGAACAAAGGCTCGACCCCCGtcatcatcgccatcatcatcaccgCGCTTTACTCCATCGTGTGTGTGGTGGGGCTGGTGGGCAACGTGCTCGTCATGTATGTGATCATCAGATACACCAAAATGAAGACTGCGACAAACATCTACATCTTTAACTTGGCCCTGGCAGATGCCTTGGCTACCAGTACCCTCCCCTTCCAAAGTGTGAATTATCTCATGGGCACCTGGCCTTTTGGGGACATCCTGTGCAAGATTGTCATGTCGATCGACTATTACAACATGTTTACAAGCATCTTCACGTTGACCACTATGAGTGTAGACCGCTACATTGCCGTGTGCCACCCTGTGAAAGCTTTGGACTTCAGGACGCCCCGCAATGCCAAGATCGTCAAcatctgcaactggatcctgtcGTCTGCTATTGGTCTGCCAGTCATGATCATGGCTTCAACTATTACTACACTCGACTACCACAGCAACGCAGGCATTGTTGACTGCACTCTCGTGTTCCCTCACCCATCCTGGTACTGGGAGAACCTGCTAAAGATCTGTGTTTTCATCTTTGCCTTCATAATGCCTGTGTTGATTATCACGGTGTGCTACGGCCTGATGATCCTGCGCTTGAAGAGTGTCCGCATGCTGTCTGGCTCCAAGGAGAAGGACCGTAACCTGCGACGCATCACGCGCATGGTGCTAGTGGTGGTGGCCGTCTTCATTGTGTGCTGGACCCCCATCCACATCTTTGTGATCATCAAGGCCCTGGTGACCATCCCCAACTCTCTACTGCAGACCATCACCTGGCACTTCTGCATCGCCTTGGGTTACACCAACAGCTGCCTCAACCCGGTGCTCTATGCCTTCCTGGACGAGAACTTCAAGCGCTGTTTCCGTGAGTTCTGCATACCCAGTCCCTCAGTACTGGACCTGCAGAATTCAATGCGATCAACACGTACCCGCAATCCACAGCGGGAGGCTCAGTCAAGTCCCACAGTAGACCGAACCAACCGGCAGGTATGACTAGCAGTCGAGATGTCATCACTGGATTTGCGCTGCCAGCCCAGTGTTGACATCAACTCAGAACTCACACAAGTCACCACAGGTCTCTGAGCTCTGTCGAGGTGGAACTACCGGTCAGCTGTGATGGTCATGGAAATCTCCCATGCCAGTCTAGATTAATTCTAAACAGTACTTTTCATATGCTAACAAAGTAGTATGACTCTTCAGTTTGAATATGTACCACACCACATATTCACTCGAGCTGAATTTAACTTCTTAGAGGTATAGTGTACCAAGAGGAAACCTTACATGAACACAAAGCGTTCCATGAAGTCGGATGACAAGGAGCCTAGAATTGCTTGTGCAAACCATCTGGCATGTTGTCCATTAGACCACTTATATTTTATAGGccaacatacactatataataaacattgcatttgtgctttcctttttctctgacAGTTTGTTTGTCATTGTGTAATAAGAAAAGGACTGAAAAGAAATTGTTTTGTCTTCGTCTCCAGTTTCtttaatgctgtaaatatattgtaaataatattttcctAAACAAGATCAGTGCTTTATATTTGTCAAAATGTGCCATTGGATTGAATTAAATATCATAGatatttataaacatatgtatatatatactgtatatcaaagATTTAAATGGCATGTCACATCCACACATTACCACATGTTACCAAGCAGTATAATATTTaaggtgttgtttttttcagctggTCCACTTGCACTGCAatgtattgttctttttttaaatctatacaGTGATTGTTGTTAGAGTGTTTGTATTTTTACGTTTGTATTTCTCTGAATCAACTGCACAATGTGAACAATTTGTTCTTTAAAATGGCACATATGCAGTTGTCATGCTTCAGTGGTGACAAGTTATGTATGTGATTATGCAAATGTGTTATTTGTCAAATCTGATTTGTAAGATATTAATCAAACTTACATTACTGAGGTCTTGAACTAAAAGATCTTGGACTTTGCTTGCATGACAACATTTTGTGATATGAACAGGTTGTACTTAATgtgatatttagtttttttcatcaaaataaattatttgttgtGAA

Function

symbol description
oprm1 Enables G protein-coupled enkephalin receptor activity and morphine receptor activity. Predicted to be involved in G protein-coupled opioid receptor signaling pathway; neuropeptide signaling pathway; and sensory perception of pain. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Is integral component of plasma membrane. Is expressed in several structures, including nervous system; notochord; otic vesicle; prechordal plate; and trunk. Orthologous to human OPRM1 (opioid receptor mu 1).

NR:

description
delta-type opioid receptor-like isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004979 beta-endorphin receptor activity molecular_function

KEGG:

id description
K04215 OPRM1; mu-type opioid receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932135.2 True 2534 mRNA 0.45 3 9244541 9268345

Neighbor

gene id symbol gene type direction distance location
agt agt coding downstream 95833 9144255 ~ 9148708 (-)
pgbd5 pgbd5,LOC107552948,LOC107743535,LOC107725485 coding downstream 115483 9097987 ~ 9129058 (-)
LOC113539201 LOC108262773 coding downstream 291793 8946682 ~ 8952748 (-)
cabp2a cabp2,cabp2a,LOC108434781,LOC107730525,LOC107556818,LOC107746641,LOC107674218,LOC107551591,LOC107664568 coding downstream 318204 8909505 ~ 8926337 (-)
ctnnd1 ctnnd1,LOC107746596,LOC107674216 coding downstream 350763 8868643 ~ 8893778 (-)
pcnx2 pcnx2,LOC108262757 coding upstream 81715 9350060 ~ 9379729 (-)
il22ra2 LOC108262818 coding upstream 140725 9409070 ~ 9458592 (-)
khdrbs2 khdrbs2,LOC108443734,LOC107676606,LOC107666564,LOC107743545 coding upstream 258595 9526940 ~ 9630009 (-)
LOC113544990 sorbs1,LOC108443736,LOC106576818,LOC107725459,LOC106604599,LOC102310545,LOC107601782,LOC107666363,LOC107563040 coding upstream 400376 9668721 ~ 9719918 (-)
pik3ap1 pik3ap1 coding upstream 455236 9723581 ~ 9735207 (-)
G43029 NA non-coding downstream 226905 9016202 ~ 9017636 (-)
G42994 NA non-coding downstream 383033 8857258 ~ 8861508 (-)
G42987 NA non-coding downstream 475355 8767988 ~ 8769186 (-)
G42970 NA non-coding downstream 489645 8754151 ~ 8754896 (-)
G42914 NA non-coding downstream 693186 8551130 ~ 8551355 (-)
G43198 NA non-coding upstream 49083 9317428 ~ 9341922 (-)
G43270 NA non-coding upstream 114363 9382708 ~ 9412002 (-)
G43352 NA non-coding upstream 248366 9516711 ~ 9517005 (-)
G43509 NA non-coding upstream 260171 9528516 ~ 9528727 (-)
G43569 NA non-coding upstream 491131 9759476 ~ 9760212 (-)
sf3b5 sf3b5 other downstream 15657 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 390747 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 460743 8754914 ~ 8783798 (-)
LOC113539440 NA other downstream 751558 8483303 ~ 8492983 (-)
trnae-cuc_7 NA other downstream 774112 8470358 ~ 8470429 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other upstream 731614 9999959 ~ 10008561 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 867965 10136310 ~ 10161523 (-)
trnag-gcc_1 NA other upstream 2440269 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 2742586 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 2876495 12144840 ~ 12152522 (-)

Expression


Co-expression Network